NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7261.1 Public Homo sapiens 10 RHOBTB1 24 110 108 CCDS HistoryNCBI Gene:9886Re-query CCDS DB by CCDS ID:7261.1Re-query CCDS DB by GeneID:9886See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7261.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337910.10 ENSP00000338671.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337910.10Link to Ensembl Protein Viewer:ENSP00000338671.5Re-query CCDS DB by Nucleotide ID:ENST00000337910Re-query CCDS DB by Protein ID:ENSP00000338671
Original member Current member EBI ENST00000357917.4 ENSP00000350595.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357917.4Link to Ensembl Protein Viewer:ENSP00000350595.4Re-query CCDS DB by Nucleotide ID:ENST00000357917Re-query CCDS DB by Protein ID:ENSP00000350595
Original member Current member NCBI NM_001242359.2 NP_001229288.1 Accepted alive Link to Nucleotide Sequence:NM_001242359.2Link to Protein Sequence:NP_001229288.1Re-query CCDS DB by Nucleotide ID:NM_001242359Re-query CCDS DB by Protein ID:NP_001229288Link to BLAST:NP_001229288.1
Original member Current member NCBI NM_001350902.2 NP_001337831.1 Accepted alive Link to Nucleotide Sequence:NM_001350902.2Link to Protein Sequence:NP_001337831.1Re-query CCDS DB by Nucleotide ID:NM_001350902Re-query CCDS DB by Protein ID:NP_001337831Link to BLAST:NP_001337831.1
Original member Current member NCBI NM_001350903.2 NP_001337832.1 Accepted alive Link to Nucleotide Sequence:NM_001350903.2Link to Protein Sequence:NP_001337832.1Re-query CCDS DB by Nucleotide ID:NM_001350903Re-query CCDS DB by Protein ID:NP_001337832Link to BLAST:NP_001337832.1
Original member Current member NCBI NM_001350904.2 NP_001337833.1 Accepted alive Link to Nucleotide Sequence:NM_001350904.2Link to Protein Sequence:NP_001337833.1Re-query CCDS DB by Nucleotide ID:NM_001350904Re-query CCDS DB by Protein ID:NP_001337833Link to BLAST:NP_001337833.1
Original member Current member NCBI NM_001350905.2 NP_001337834.1 Accepted alive Link to Nucleotide Sequence:NM_001350905.2Link to Protein Sequence:NP_001337834.1Re-query CCDS DB by Nucleotide ID:NM_001350905Re-query CCDS DB by Protein ID:NP_001337834Link to BLAST:NP_001337834.1
Original member Current member NCBI NM_014836.5 NP_055651.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014836.5Link to Protein Sequence:NP_055651.1Re-query CCDS DB by Nucleotide ID:NM_014836Re-query CCDS DB by Protein ID:NP_055651Link to BLAST:NP_055651.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229288.1 696 O94844 696 100% 0 0
NP_001337831.1 696 O94844 696 100% 0 0
NP_001337832.1 696 O94844 696 100% 0 0
NP_001337833.1 696 O94844 696 100% 0 0
NP_001337834.1 696 O94844 696 100% 0 0
NP_055651.1 696 O94844 696 100% 0 0

Chromosomal Locations for CCDS 7261.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 60871482 60871651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60872185 60872290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60874954 60875042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60877908 60878058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60886112 60886230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60888212 60889185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60892810 60892995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60910887 60910990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 60911351 60911542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGGACGCTGACATGGACTACGAAAGACCCAACGTTGAAACTATCAAATGTGTGGTCGTGGGTGACAATG
CCGTGGGGAAGACGCGCTTGATCTGTGCCAGGGCGTGCAACACCACACTCACGCAGTATCAGCTGCTGGC
CACCCACGTGCCAACAGTGTGGGCGATTGACCAGTACCGCGTGTGCCAGGAGGTCTTGGAGCGTTCTCGG
GATGTTGTTGATGAAGTGAGTGTTTCTCTCAGGCTTTGGGATACTTTTGGTGATCATCACAAAGACAGAC
GCTTTGCATATGGCAGGTCTGATGTTGTGGTCCTCTGTTTTTCGATTGCTAATCCCAATTCCCTAAATCA
TGTGAAAAGCATGTGGTATCCAGAAATCAAGCACTTTTGCCCTCGAACACCCGTTATCCTTGTTGGGTGC
CAGCTTGATCTCCGCTATGCCGACCTGGAAGCTGTTAATCGAGCCAGGCGCCCGTTAGCAAGGCCCATAA
AGAGAGGGGATATTTTGCCCCCAGAAAAAGGCCGAGAGGTAGCAAAGGAACTTGGCTTACCATACTATGA
AACAAGCGTGTTTGACCAGTTTGGTATCAAGGATGTGTTTGACAATGCAATCCGAGCAGCGCTGATTTCC
CGCAGGCACCTGCAATTCTGGAAATCCCACCTAAAGAAAGTCCAGAAACCTTTACTTCAGGCACCCTTCC
TACCTCCAAAAGCCCCTCCACCGGTCATCAAAATTCCAGAGTGTCCTTCCATGGGGACAAATGAAGCTGC
CTGTTTACTGGACAATCCTCTATGTGCCGATGTTCTGTTCATCCTTCAGGACCAGGAACACATCTTTGCA
CATCGAATTTACCTCGCTACCTCTTCTTCCAAATTTTATGATCTGTTTTTAATGGAATGTGAAGAATCCC
CAAATGGGAGTGAAGGAGCCTGTGAGAAAGAGAAGCAGAGCAGAGATTTCCAGGGGCGGATATTGAGTGT
CGACCCAGAGGAAGAAAGGGAGGAGGGCCCGCCTAGGATTCCTCAGGCCGACCAGTGGAAGTCTTCAAAC
AAGAGCCTGGTGGAGGCTCTGGGGCTGGAAGCCGAGGGTGCAGTTCCTGAGACACAGACTTTGACCGGAT
GGAGTAAGGGGTTCATTGGCATGCACAGGGAAATGCAAGTCAACCCCATTTCAAAGCGGATGGGGCCCAT
GACTGTGGTCAGGATGGACGCTTCAGTCCAGCCAGGCCCTTTTCGGACCCTGCTCCAGTTTCTTTATACG
GGACAACTGGATGAAAAGGAAAAGGATTTGGTGGGCCTGGCTCAGATCGCAGAGGTCCTCGAGATGTTCG
ATTTGAGGATGATGGTGGAAAACATCATGAACAAGGAAGCCTTCATGAACCAGGAGATTACGAAAGCCTT
TCACGTAAGGAAAGCCAATCGGATAAAAGAGTGTCTCAGCAAGGGAACGTTCTCGGACGTGACATTTAAA
TTGGACGATGGAGCCATCAGTGCCCACAAGCCGCTGCTGATCTGTAGCTGTGAGTGGATGGCAGCCATGT
TCGGGGGGTCATTTGTGGAAAGTGCCAACAGTGAGGTGTATCTCCCGAACATAAACAAGATATCAATGCA
AGCAGTATTGGATTATCTCTATACCAAGCAGTTGTCTCCTAACTTGGATCTGGACCCGCTGGAATTAATT
GCCTTGGCAAACAGATTTTGCCTGCCACACTTGGTTGCACTTGCAGAACAGCATGCCGTTCAGGAGTTGA
CCAAAGCCGCCACGAGTGGCGTGGGCATTGACGGAGAAGTGCTCTCTTACTTGGAATTGGCTCAGTTTCA
CAATGCCCACCAGTTGGCCGCCTGGTGTTTGCACCACATCTGCACCAACTACAACAGTGTATGCTCCAAG
TTCCGTAAGGAAATCAAATCAAAATCTGCAGACAACCAGGAATACTTCGAGCGGCACCGCTGGCCCCCTG
TGTGGTACCTGAAGGAAGAAGATCACTACCAGCGTGTGAAAAGGGAACGAGAGAAGGAAGATATTGCACT
AAATAAGCATCGCTCAAGACGAAAGTGGTGCTTCTGGAATTCATCTCCAGCAGTGGCCTGA

Translation (696 aa):
MDADMDYERPNVETIKCVVVGDNAVGKTRLICARACNTTLTQYQLLATHVPTVWAIDQYRVCQEVLERSR
DVVDEVSVSLRLWDTFGDHHKDRRFAYGRSDVVVLCFSIANPNSLNHVKSMWYPEIKHFCPRTPVILVGC
QLDLRYADLEAVNRARRPLARPIKRGDILPPEKGREVAKELGLPYYETSVFDQFGIKDVFDNAIRAALIS
RRHLQFWKSHLKKVQKPLLQAPFLPPKAPPPVIKIPECPSMGTNEAACLLDNPLCADVLFILQDQEHIFA
HRIYLATSSSKFYDLFLMECEESPNGSEGACEKEKQSRDFQGRILSVDPEEEREEGPPRIPQADQWKSSN
KSLVEALGLEAEGAVPETQTLTGWSKGFIGMHREMQVNPISKRMGPMTVVRMDASVQPGPFRTLLQFLYT
GQLDEKEKDLVGLAQIAEVLEMFDLRMMVENIMNKEAFMNQEITKAFHVRKANRIKECLSKGTFSDVTFK
LDDGAISAHKPLLICSCEWMAAMFGGSFVESANSEVYLPNINKISMQAVLDYLYTKQLSPNLDLDPLELI
ALANRFCLPHLVALAEQHAVQELTKAATSGVGIDGEVLSYLELAQFHNAHQLAAWCLHHICTNYNSVCSK
FRKEIKSKSADNQEYFERHRWPPVWYLKEEDHYQRVKREREKEDIALNKHRSRRKWCFWNSSPAVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH