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Report for CCDS72715.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72715.1 Public Homo sapiens 1 PADI6 24 110 108 CCDS HistoryNCBI Gene:353238Re-query CCDS DB by CCDS ID:72715.1Re-query CCDS DB by GeneID:353238See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72715.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619609.1 ENSP00000483125.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000619609.1Link to Ensembl Protein Viewer:ENSP00000483125.1Re-query CCDS DB by Nucleotide ID:ENST00000619609Re-query CCDS DB by Protein ID:ENSP00000483125
Original member Current member NCBI NM_207421.4 NP_997304.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207421.4Link to Protein Sequence:NP_997304.3Re-query CCDS DB by Nucleotide ID:NM_207421Re-query CCDS DB by Protein ID:NP_997304Link to BLAST:NP_997304.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997304.3 694 Q6TGC4 694 100% 0 0

Chromosomal Locations for CCDS 72715.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 17372246 17372361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17373056 17373233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17375427 17375499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17379920 17379987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17381047 17381164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17381967 17382092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17388381 17388559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17388777 17388880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17392114 17392225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17393975 17394082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17394300 17394454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17394951 17395107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17395540 17395663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17397071 17397141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17398686 17398847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17401205 17401438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGGTCAGCGTGGAGGGCCGAGCCATGTCCTTCCAGAGTATCATCCACCTGTCCCTGGACAGCCCTGTCC
ATGCCGTTTGTGTGTTGGGCACAGAAATCTGCTTGGATCTCAGCGGGTGTGCCCCCCAGAAGTGCCAGTG
CTTCACCATCCATGGCTCTGGGAGGGTCTTGATCGATGTGGCCAACACGGTGATTTCTGAGAAGGAGGAC
GCCACCATCTGGTGGCCCCTGTCTGATCCCACGTACGCCACAGTGAAGATGACATCGCCCAGCCCTTCCG
TGGATGCGGATAAGGTCTCGGTCACATACTATGGGCCCAACGAGGATGCCCCCGTGGGCACAGCTGTGCT
GTACCTCACTGGCATTGAGGTCTCTCTAGAGGTAGACATCTACCGCAATGGGCAAGTTGAGATGTCAAGT
GACAAACAGGCTAAGAAAAAATGGATCTGGGGTCCCAGCGGTTGGGGTGCCATCCTGCTTGTGAATTGCA
ACCCTGCTGATGTGGGCCAGCAACTTGAGGACAAGAAAACCAAGAAAGTGATCTTTTCAGAGGAAATAAC
GAATCTGTCCCAGATGACTCTGAATGTCCAAGGCCCCAGCTGTATCTTAAAGAAATATCGGCTAGTCCTC
CATACCTCCAAGGAAGAGTCGAAGAAGGCGAGAGTCTACTGGCCCCAAAAAGACAACTCCAGTACCTTTG
AGTTGGTGCTGGGGCCCGACCAGCACGCCTATACCTTGGCCCTCCTCGGGAACCACTTGAAGGAGACTTT
CTACGTTGAAGCTATAGCATTCCCATCTGCCGAATTCTCAGGCCTCATCTCCTACTCTGTGTCCCTGGTG
GAGGAGTCTCAAGACCCGTCAATTCCAGAGACTGTGCTGTACAAAGACACGGTGGTGTTCCGGGTGGCTC
CCTGTGTCTTCATTCCCTGTACCCAGGTGCCTCTGGAGGTTTACCTGTGCAGGGAGCTGCAGCTGCAGGG
TTTTGTGGACACAGTGACGAAGCTGAGTGAGAAGAGCAACAGCCAGGTGGCATCTGTCTATGAGGACCCC
AACCGCCTGGGCAGGTGGCTCCAGGATGAGATGGCCTTCTGCTACACCCAGGCTCCCCACAAGACAACGT
CCTTGATCCTCGACACACCTCAGGCCGCCGATCTCGATGAGTTCCCCATGAAGTACTCACTGAGCCCTGG
TATTGGCTACATGATCCAGGACACTGAGGACCATAAAGTGGCCAGCATGGATTCCATTGGGAACCTGATG
GTGTCCCCACCTGTCAAGGTCCAAGGGAAAGAGTACCCGCTGGGCAGAGTCCTCATTGGCAGCAGCTTTT
ACCCCAGCGCAGAGGGCCGGGCCATGAGTAAGACCCTCCGAGACTTCCTCTATGCCCAGCAGGTCCAAGC
GCCGGTGGAGCTCTACTCAGATTGGCTAATGACTGGCCACGTGGATGAGTTCATGTGCTTCATCCCCACA
GATGACAAGAATGAGGGCAAAAAGGGCTTCCTGCTGCTCCTGGCCAGCCCCAGTGCCTGCTATAAACTGT
TCCGAGAGAAACAGAAGGAAGGCTATGGCGACGCTCTTCTGTTTGATGAGCTTAGAGCAGATCAGCTCCT
GTCTAATGGAAGGGAAGCCAAAACCATCGACCAACTTCTGGCTGATGAAAGCCTGAAGAAGCAGAATGAA
TACGTGGAGAAGTGCATTCACCTGAACCGTGACATCCTGAAGACGGAGCTGGGCCTGGTGGAACAGGACA
TCATCGAGATTCCCCAGCTGTTCTGCTTGGAGAAGCTGACTAACATCCCCTCTGACCAGCAGCCCAAGAG
GTCCTTTGCGAGGCCATACTTCCCTGACCTGTTGCGGATGATTGTGATGGGCAAGAACCTGGGGATCCCC
AAGCCTTTTGGGCCCCAAATCAAGGGGACCTGCTGCCTGGAAGAAAAGATTTGCTGCTTGCTGGAGCCCC
TGGGCTTCAAGTGCACCTTCATCAATGACTTTGACTGTTACCTGACAGAGGTCGGAGACATCTGTGCCTG
TGCCAACATCCGCCGGGTGCCCTTTGCCTTCAAATGGTGGAAGATGGTACCTTAG

Translation (694 aa):
MVSVEGRAMSFQSIIHLSLDSPVHAVCVLGTEICLDLSGCAPQKCQCFTIHGSGRVLIDVANTVISEKED
ATIWWPLSDPTYATVKMTSPSPSVDADKVSVTYYGPNEDAPVGTAVLYLTGIEVSLEVDIYRNGQVEMSS
DKQAKKKWIWGPSGWGAILLVNCNPADVGQQLEDKKTKKVIFSEEITNLSQMTLNVQGPSCILKKYRLVL
HTSKEESKKARVYWPQKDNSSTFELVLGPDQHAYTLALLGNHLKETFYVEAIAFPSAEFSGLISYSVSLV
EESQDPSIPETVLYKDTVVFRVAPCVFIPCTQVPLEVYLCRELQLQGFVDTVTKLSEKSNSQVASVYEDP
NRLGRWLQDEMAFCYTQAPHKTTSLILDTPQAADLDEFPMKYSLSPGIGYMIQDTEDHKVASMDSIGNLM
VSPPVKVQGKEYPLGRVLIGSSFYPSAEGRAMSKTLRDFLYAQQVQAPVELYSDWLMTGHVDEFMCFIPT
DDKNEGKKGFLLLLASPSACYKLFREKQKEGYGDALLFDELRADQLLSNGREAKTIDQLLADESLKKQNE
YVEKCIHLNRDILKTELGLVEQDIIEIPQLFCLEKLTNIPSDQQPKRSFARPYFPDLLRMIVMGKNLGIP
KPFGPQIKGTCCLEEKICCLLEPLGFKCTFINDFDCYLTEVGDICACANIRRVPFAFKWWKMVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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