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Report for CCDS72749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72749.1 Public Homo sapiens 1 CCDC28B 24 110 108 CCDS HistoryNCBI Gene:79140Re-query CCDS DB by CCDS ID:72749.1Re-query CCDS DB by GeneID:79140See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72749.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421922.6 ENSP00000413017.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421922.6Link to Ensembl Protein Viewer:ENSP00000413017.2Re-query CCDS DB by Nucleotide ID:ENST00000421922Re-query CCDS DB by Protein ID:ENSP00000413017
Original member Current member NCBI NM_001301011.2 NP_001287940.1 Accepted alive Link to Nucleotide Sequence:NM_001301011.2Link to Protein Sequence:NP_001287940.1Re-query CCDS DB by Nucleotide ID:NM_001301011Re-query CCDS DB by Protein ID:NP_001287940Link to BLAST:NP_001287940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287940.1 241 Q9BUN5-3 241 100% 0 0

Chromosomal Locations for CCDS 72749.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 32201936 32202099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32203879 32204045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32204186 32204379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32204598 32204798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGGATGACAAAAAGAAGAAACGGAGTCCCAAGCCCTGCCTGGCCCAGCCAGCCCAGGCCCCAGGCACAC
TACGGAGGGTCCCTGTGCCTACCAGCCACAGCGGCTCCTTGGCCCTAGGACTTCCTCATCTGCCATCCCC
CAAGCAGCGGGCCAAGTTCAAGAGAGTAGGCAAAGAGAAGTGCCGCCCAGTCCTGGCTGGAGGTGGAAGC
GGCTCTGCAGGCACGCCCCTGCAGCACTCCTTCCTGACCGAGGTGACTGATGTCTATGAGATGGAGGGGG
GACTCCTGAACCTGCTCAATGATTTCCACTCTGGCCGGCTGCAGGCCTTCGGGAAGGAATGCTCCTTTGA
GCAGCTGGAGCACGTTCGGGAGATGCAGGAGAAGCTAGCCCGGCTGCACTTCAGCCTGGATGTGTGTGGG
GAGGAGGAGGACGATGAAGAGGAAGAGGATGGGGTCACTGAGGGGCTGCCAGAGGAGCAGAAGAAGACAA
TGGCTGACCGTAACCTGGACCAGCTGCTTAGCAATCTGGAAGACCTCAGTAATTCTATGTATCCTTTCCA
AGGAACCCGTCTATGTGTGTGTGTTCCTGAGAGGTCAGTTTCCTCCTCTCCAGCCCTCCAGGAGTATTCA
CACACAACCAACTTCCCCACCTCTTGCAGTCCTGTCAGATTTAGCCACAGACTGCCCAAACCCAGGTACA
GGAATTTAGAATTTCCCCAAAATTAG

Translation (241 aa):
MDDKKKKRSPKPCLAQPAQAPGTLRRVPVPTSHSGSLALGLPHLPSPKQRAKFKRVGKEKCRPVLAGGGS
GSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCG
EEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSMYPFQGTRLCVCVPERSVSSSPALQEYS
HTTNFPTSCSPVRFSHRLPKPRYRNLEFPQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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