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Report for CCDS72821.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72821.2 Under review, update Homo sapiens 1 SETSIP 24 110 108 CCDS HistoryNCBI Gene:646817Re-query CCDS DB by CCDS ID:72821.2Re-query CCDS DB by GeneID:646817See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 72821.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000596516.3 ENSP00000480946.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000596516.3Link to Ensembl Protein Viewer:ENSP00000480946.2Re-query CCDS DB by Nucleotide ID:ENST00000596516Re-query CCDS DB by Protein ID:ENSP00000480946
Original member Current member NCBI NM_001287737.2 NP_001274666.2 MANE Select Pending alive Link to Nucleotide Sequence:NM_001287737.2Link to Protein Sequence:NP_001274666.2Re-query CCDS DB by Nucleotide ID:NM_001287737Re-query CCDS DB by Protein ID:NP_001274666Link to BLAST:NP_001274666.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274666.2 292 P0DME0-2 292 100% 0 0

Chromosomal Locations for CCDS 72821.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 92074533 92075411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGCCCCTAAACGCCAGTCTCCACTCCCACTTCAAAAGAAGAAACCAAGACCACCTCCTGCTCTGGGAC
TGGAGGAGACATCGGCCTCTGCAGGCTTGCCGAAGAAGGGAGAAAAAGAACAGCAAGAAGCAATTGAACA
CATTGATGAAGTACAAAATGAAATAGACAGACTTAATGAACAAGACAGTGAGGAGATTTTGAAAGTAGAA
CAGAAATATAACAAACTCCGCCAACCATTTTTTCAGAAGAGGTCAGAATTGATCGCCAAAATCCCAAATT
TTGGGGTAACAACATTTGTCAACCATCCACAAGTGTCTTCACTGCTTGGGGAGGAGGACGAAGAGGCACT
GCATTATTTGACTAAAGTTGAAGTGACAGAATTTGAAGATATTAAATCAGGTTACAGAATAGATTTTTAT
TTTGATGAAAATCCTTACTTTGAAAATAAAGTTTTCTCCAAAGAATTTCATCTGAATGAGAGTGGTGATC
CATCTTCAAAGTCCACCAAAATCAAATGGAAATCTGGAAAGGATGTGACGAAACGTTCAAGTCAAACGCA
GAATAAAGCCAGCAGGAAGAGGCAGCATGAGGAACCAGAGAGCTTCTTTACCTGGTTTACTGATCATTCT
GATGCAGGTGCTGATGAGTTAGAAGAGGTCATCAAAGATGATATTTGGCCAAACCCATTACAGTATTACT
TGGTTCCTGATATGGATGATGAAGAAGGAGGAGAAGATGATGATGATGATGATGATGATGGTGATGAAGG
GGAGGAAGAATTAGAAGATATTGATGAAGGGGATGAGGATGAAGGTGAAGAAGATGAAGATGATGATGAA
GGGGAGGAAGGAGAGGAGGATGAAGGAGAAGATGACTAA

Translation (292 aa):
MAPKRQSPLPLQKKKPRPPPALGLEETSASAGLPKKGEKEQQEAIEHIDEVQNEIDRLNEQDSEEILKVE
QKYNKLRQPFFQKRSELIAKIPNFGVTTFVNHPQVSSLLGEEDEEALHYLTKVEVTEFEDIKSGYRIDFY
FDENPYFENKVFSKEFHLNESGDPSSKSTKIKWKSGKDVTKRSSQTQNKASRKRQHEEPESFFTWFTDHS
DAGADELEEVIKDDIWPNPLQYYLVPDMDDEEGGEDDDDDDDDGDEGEEELEDIDEGDEDEGEEDEDDDE
GEEGEEDEGEDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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