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Report for CCDS72870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72870.1 Public Homo sapiens 1 PEX11B 24 110 108 CCDS HistoryNCBI Gene:8799Re-query CCDS DB by CCDS ID:72870.1Re-query CCDS DB by GeneID:8799See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72870.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537888.1 ENSP00000437510.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537888.1Link to Ensembl Protein Viewer:ENSP00000437510.1Re-query CCDS DB by Nucleotide ID:ENST00000537888Re-query CCDS DB by Protein ID:ENSP00000437510
Original member Current member NCBI NM_001184795.1 NP_001171724.1 Accepted alive Link to Nucleotide Sequence:NM_001184795.1Link to Protein Sequence:NP_001171724.1Re-query CCDS DB by Nucleotide ID:NM_001184795Re-query CCDS DB by Protein ID:NP_001171724Link to BLAST:NP_001171724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171724.1 245 O96011-2 245 100% 0 0

Chromosomal Locations for CCDS 72870.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 145912161 145912566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145916817 145917018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145917701 145917816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145918432 145918445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGGGAAACTGAGGGCCGCCCAGTATGCTTGCTCTCTTCTTGGCCATGCGCTGCAGAGGCATGGAGCCA
GTCCTGAGTTACAGAAACAGATTCGACAACTGGAGAGCCACCTGAGCCTTGGAAGAAAGCTTCTACGCCT
GGGTAACTCAGCAGATGCCCTTGAGTCAGCCAAAAGAGCTGTTCACCTATCAGATGTTGTCCTGAGATTC
TGCATCACTGTTAGTCACCTCAATCGAGCCTTGTACTTCGCCTGTGACAATGTCCTGTGGGCTGGAAAGT
CTGGACTGGCTCCCCGTGTGGATCAGGAGAAGTGGGCCCAGCGTTCATTCAGGTACTATTTGTTTTCCCT
CATCATGAATTTGAGCCGTGATGCTTATGAGATTCGCCTACTGATGGAGCAAGAGTCTTCTGCTTGTAGC
CGGCGACTGAAAGGTTCTGGAGGAGGAGTCCCAGGAGGAAGTGAAACTGGGGGACTTGGGGGACCAGGGA
CTCCAGGAGGAGGTCTGCCCCAACTGGCTCTGAAACTTCGGCTGCAAGTCCTGCTCCTGGCTCGAGTCCT
TAGAGGTCATCCCCCACTTCTGCTAGACGTGGTCAGAAATGCCTGTGATCTCTTCATTCCTCTGGACAAA
CTAGGCCTCTGGCGCTGTGGCCCTGGGATTGTGGGGCTTTGTGGCCTCGTGTCCTCCATCCTGTCTATTC
TCACCCTAATCTATCCCTGGCTACGACTCAAGCCCTGA

Translation (245 aa):
MGKLRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLRLGNSADALESAKRAVHLSDVVLRF
CITVSHLNRALYFACDNVLWAGKSGLAPRVDQEKWAQRSFRYYLFSLIMNLSRDAYEIRLLMEQESSACS
RRLKGSGGGVPGGSETGGLGGPGTPGGGLPQLALKLRLQVLLLARVLRGHPPLLLDVVRNACDLFIPLDK
LGLWRCGPGIVGLCGLVSSILSILTLIYPWLRLKP


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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