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Report for CCDS72929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72929.1 Public Homo sapiens 1 SLC50A1 24 110 108 CCDS HistoryNCBI Gene:55974Re-query CCDS DB by CCDS ID:72929.1Re-query CCDS DB by GeneID:55974See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72929.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000484157.5 ENSP00000420189.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000484157.5Link to Ensembl Protein Viewer:ENSP00000420189.1Re-query CCDS DB by Nucleotide ID:ENST00000484157Re-query CCDS DB by Protein ID:ENSP00000420189
Original member Current member NCBI NM_001287590.2 NP_001274519.1 Accepted alive Link to Nucleotide Sequence:NM_001287590.2Link to Protein Sequence:NP_001274519.1Re-query CCDS DB by Nucleotide ID:NM_001287590Re-query CCDS DB by Protein ID:NP_001274519Link to BLAST:NP_001274519.1

Chromosomal Locations for CCDS 72929.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155135672 155135680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155136299 155136376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155137561 155137722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155137979 155138098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155138180 155138281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGGAAGAGCTCGGACCTCAGGCACATGCGAATGACCCGGAGTGTGGACAACGTCCAGTTCCTGCCCTTT
CTCACCACGGAAGTCAACGTGTTGTGCTCCTACAGACTGCAACCCTGCTAGGGGTCCTTCTCCTGGGTTA
TGGCTACTTTTGGCTCCTGGTACCCAACCCTGAGGCCCGGCTTCAGCAGTTGGGCCTCTTCTGCAGTGTC
TTCACCATCAGCATGTACCTCTCACCACTGGCTGACTTGGCTAAGGTGATTCAAACTAAATCAACCCAAT
GTCTCTCCTACCCACTCACCATTGCTACCCTTCTCACCTCTGCCTCCTGGTGCCTCTATGGGTTTCGACT
CAGAGATCCCTATATCATGGTGTCCAACTTTCCAGGAATCGTCACCAGCTTTATCCGCTTCTGGCTTTTC
TGGAAGTACCCCCAGGAGCAAGACAGGAACTACTGGCTCCTGCAAACCTGA

Translation (156 aa):
MEELGPQAHANDPECGQRPVPALSHHGSQRVVLLQTATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSV
FTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLF
WKYPQEQDRNYWLLQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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