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Report for CCDS730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
730.1 Public Homo sapiens 1 BARHL2 24 110 108 CCDS HistoryNCBI Gene:343472Re-query CCDS DB by CCDS ID:730.1Re-query CCDS DB by GeneID:343472See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 730.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370445.5 ENSP00000359474.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370445.5Link to Ensembl Protein Viewer:ENSP00000359474.3Re-query CCDS DB by Nucleotide ID:ENST00000370445Re-query CCDS DB by Protein ID:ENSP00000359474
Original member Current member NCBI NM_020063.2 NP_064447.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020063.2Link to Protein Sequence:NP_064447.1Re-query CCDS DB by Nucleotide ID:NM_020063Re-query CCDS DB by Protein ID:NP_064447Link to BLAST:NP_064447.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064447.1 387 Q9NY43 387 100% 0 0

Chromosomal Locations for CCDS 730.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 90712312 90712624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90714531 90714756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90716571 90717195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGACAATGGAAGGGGCCAGCGGGTCGAGTTTTGGAATAGACACGATTTTGTCCAGTGCCAGTTCAGGCA
GCCCAGGCATGATGAATGGAGATTTCCGCCCGCTCGGTGAGGCCAGGACCGCGGATTTTAGGAGTCAGGC
CACCCCATCTCCCTGTTCGGAGATTGATACCGTAGGGACGGCGCCTTCTTCTCCTATCTCAGTCACCATG
GAGCCCCCGGAGCCGCATCTGGTAGCAGACGCGACCCAGCATCATCACCACCTCCACCACAGCCAGCAGC
CGCCGCCGCCGGCCGCGGCCCCGACGCAAAGTTTGCAGCCTTTGCCCCAACAGCAGCAGCCGCTGCCGCC
ACAGCAGCCGCCGCCGCCGCCCCCCCAGCAGCTGGGCTCGGCCGCCTCGGCCCCCAGGACTTCCACGTCT
TCTTTTTTAATTAAGGACATCTTGGGCGACAGCAAACCTCTGGCGGCATGTGCACCCTACAGCACCAGCG
TATCCTCTCCCCACCACACCCCGAAGCAGGAGAGCAACGCAGTGCACGAGAGCTTCAGGCCAAAGCTCGA
GCAGGAGGACAGCAAGACCAAACTCGACAAGCGGGAGGATTCCCAGAGCGACATCAAATGCCACGGGACA
AAGGAGGAAGGAGACCGGGAGATTACGAGTAGCCGTGAGAGTCCCCCTGTGAGAGCCAAGAAGCCTCGAA
AAGCAAGGACAGCTTTTTCCGACCACCAGCTCAATCAACTGGAGCGTAGCTTTGAGCGGCAGAAGTACCT
GAGCGTGCAGGATCGCATGGACCTGGCTGCAGCGCTCAACCTCACTGACACCCAAGTCAAGACCTGGTAC
CAGAACCGCAGGACCAAGTGGAAGCGGCAGACAGCGGTGGGCCTGGAGTTGCTGGCCGAGGCAGGGAACT
ACTCGGCGCTGCAGAGGATGTTTCCATCGCCTTATTTCTATCACCCAAGCCTGCTGGGCAGCATGGACAG
CACTACGGCGGCGGCGGCTGCCGCTGCCATGTACAGCAGCATGTACCGGACTCCTCCAGCACCCCATCCC
CAGCTGCAGCGGCCCCTGGTGCCCCGTGTGCTCATCCACGGCCTAGGGCCTGGGGGACAGCCAGCCCTTA
ATCCATTGTCCAGCCCCATCCCAGGCACCCCACACCCCCGGTGA

Translation (387 aa):
MTMEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGTAPSSPISVTM
EPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQPPPPPPQQLGSAASAPRTSTS
SFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAVHESFRPKLEQEDSKTKLDKREDSQSDIKCHGT
KEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWY
QNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHP
QLQRPLVPRVLIHGLGPGGQPALNPLSSPIPGTPHPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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