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Report for CCDS73011.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73011.1 Public Homo sapiens 1 RAB7B 24 110 108 CCDS HistoryNCBI Gene:338382Re-query CCDS DB by CCDS ID:73011.1Re-query CCDS DB by GeneID:338382See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73011.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000617991.4 ENSP00000479762.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617991.4Link to Ensembl Protein Viewer:ENSP00000479762.1Re-query CCDS DB by Nucleotide ID:ENST00000617991Re-query CCDS DB by Protein ID:ENSP00000479762
Original member Current member EBI ENST00000617070.5 ENSP00000482499.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617070.5Link to Ensembl Protein Viewer:ENSP00000482499.1Re-query CCDS DB by Nucleotide ID:ENST00000617070Re-query CCDS DB by Protein ID:ENSP00000482499
Original member Current member EBI ENST00000623597.3 ENSP00000485468.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000623597.3Link to Ensembl Protein Viewer:ENSP00000485468.1Re-query CCDS DB by Nucleotide ID:ENST00000623597Re-query CCDS DB by Protein ID:ENSP00000485468
Original member Current member NCBI NM_001164522.3 NP_001157994.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164522.3Link to Protein Sequence:NP_001157994.1Re-query CCDS DB by Nucleotide ID:NM_001164522Re-query CCDS DB by Protein ID:NP_001157994Link to BLAST:NP_001157994.1
Original member Current member NCBI NM_177403.6 NP_796377.3 Accepted alive Link to Nucleotide Sequence:NM_177403.6Link to Protein Sequence:NP_796377.3Re-query CCDS DB by Nucleotide ID:NM_177403Re-query CCDS DB by Protein ID:NP_796377Link to BLAST:NP_796377.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157994.1 199 Q96AH8 199 100% 0 0
NP_796377.3 199 Q96AH8 199 100% 0 0

Chromosomal Locations for CCDS 73011.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 205978851 205978928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205985540 205985665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205992480 205992695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205993420 205993546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205994083 205994135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGAATCCCCGGAAGAAGGTGGACCTGAAACTCATTATCGTCGGAGCCATTGGTGTGGGAAAGACCTCCC
TCCTTCACCAATATGTGCACAAGACGTTTTATGAGGAATACCAGACCACACTGGGGGCCAGCATCCTCTC
CAAGATTATCATATTGGGTGACACAACTTTGAAGTTACAGATCTGGGACACGGGCGGTCAGGAGCGGTTC
CGCTCCATGGTGTCCACGTTCTACAAGGGCTCCGATGGCTGCATCCTAGCTTTTGATGTCACCGACCTGG
AGTCTTTTGAAGCCCTGGATATCTGGCGGGGTGATGTCCTGGCCAAGATTGTCCCCATGGAGCAGTCCTA
CCCCATGGTGTTGTTGGGGAACAAGATCGATCTGGCAGACCGGAAGGTACCCCAGGAAGTAGCTCAAGGC
TGGTGTAGAGAGAAAGATATTCCTTACTTTGAAGTCAGTGCCAAGAATGACATCAATGTGGTGCAAGCGT
TTGAGATGCTGGCCAGTAGGGCTCTGTCGAGGTACCAGAGCATCTTAGAAAATCACCTCACAGAATCCAT
CAAGCTCTCGCCAGACCAGTCAAGGAGCAGATGCTGCTGA

Translation (199 aa):
MNPRKKVDLKLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERF
RSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDLADRKVPQEVAQG
WCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSILENHLTESIKLSPDQSRSRCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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