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Report for CCDS73140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73140.1 Public Homo sapiens 10 RTKN2 24 110 108 CCDS HistoryNCBI Gene:219790Re-query CCDS DB by CCDS ID:73140.1Re-query CCDS DB by GeneID:219790See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73140.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395260.3 ENSP00000378678.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395260.3Link to Ensembl Protein Viewer:ENSP00000378678.3Re-query CCDS DB by Nucleotide ID:ENST00000395260Re-query CCDS DB by Protein ID:ENSP00000378678
Original member Current member NCBI NM_001282941.2 NP_001269870.1 Accepted alive Link to Nucleotide Sequence:NM_001282941.2Link to Protein Sequence:NP_001269870.1Re-query CCDS DB by Nucleotide ID:NM_001282941Re-query CCDS DB by Protein ID:NP_001269870Link to BLAST:NP_001269870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269870.1 163 Q8IZC4-3 163 100% 0 0

Chromosomal Locations for CCDS 73140.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62239644 62239765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62241142 62241195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62245999 62246057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62262625 62262821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62268551 62268610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGGAGGGGCCGAGCCTGAGGGGTCCTGCGCTCCGCCTGGCGGGGCTTCCCACCCAGCAGGACTGCAACA
TTCAAGAAAAAATAGACTTAGAAATTCGAATGCGAGAAGGAATATGGAAACTCCTTTCTCTGAGCACTCA
GAAAGATCAAGTTTTACATGCAGTTAAGAATCTCATGGTGTGCAATGCTCGACTAATGGCCTATACATCG
GAGCTACAGAAATTAGAAGAACAGATTGCAAATCAGACTGGAAGATGTGATGTGAAATTTGAAAGTAAAG
AACGAACAGCATGTAAAGGAAAGATTGCCATATCAGATATTCGAATACCACTAATGTGGAAAGACTCTGA
TCACTTCAGCAATAAAGAACGATCACGACGCTATGCCATTTTTTGTTTATTCAAAATGGGAGCTAATGTG
TTTGATACTGATGTGGTGAATGTGGATAAAACAATCACAGATATATGTTTTGAAAATGTAACCATATTGT
AA

Translation (163 aa):
MEGPSLRGPALRLAGLPTQQDCNIQEKIDLEIRMREGIWKLLSLSTQKDQVLHAVKNLMVCNARLMAYTS
ELQKLEEQIANQTGRCDVKFESKERTACKGKIAISDIRIPLMWKDSDHFSNKERSRRYAIFCLFKMGANV
FDTDVVNVDKTITDICFENVTIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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