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Report for CCDS73204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73204.1 Public Homo sapiens 10 ATRNL1 24 110 108 CCDS HistoryNCBI Gene:26033Re-query CCDS DB by CCDS ID:73204.1Re-query CCDS DB by GeneID:26033See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73204.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000609571.5 ENSP00000476902.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000609571.5Link to Ensembl Protein Viewer:ENSP00000476902.2Re-query CCDS DB by Nucleotide ID:ENST00000609571Re-query CCDS DB by Protein ID:ENSP00000476902
Original member Current member NCBI NM_001276282.4 NP_001263211.1 Accepted alive Link to Nucleotide Sequence:NM_001276282.4Link to Protein Sequence:NP_001263211.1Re-query CCDS DB by Nucleotide ID:NM_001276282Re-query CCDS DB by Protein ID:NP_001263211Link to BLAST:NP_001263211.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263211.1 467 Q5VV63-2 467 100% 0 0

Chromosomal Locations for CCDS 73204.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 115093751 115094043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115120185 115120268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115121699 115121812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115127593 115127721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115129327 115129535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115160040 115160214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115165558 115165645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 115171037 115171348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGAGACTGGGGGCCGGGCCCGCACTGGTACCCCGCAGCCAGCGGCCCCGGGGGTGTGGAGGGCTCGGC
CGGCGGGCGGCGGCGGCGGGGGCGCCTCCTCCTGGCTGCTGGACGGGAACAGCTGGCTGCTGTGCTATGG
CTTCCTCTACCTGGCGCTCTACGCGCAGGTGTCCCAGTCCAAGCCGTGCGAGAGGACCGGCTCCTGCTTC
TCGGGCCGCTGTGTCAACTCCACCTGCCTCTGCGACCCGGGCTGGGTGGGGGACCAGTGCCAGCACTGCC
AGGGCAGGTTCAAGTTAACAGAACCTTCTGGATATTTAACAGATGGCCCAATTAACTATAAATATAAAAC
TAAATGTACTTGGCTCATTGAAGGCTATCCAAATGCAGTGTTAAGATTAAGATTCAATCATTTTGCTACA
GAATGTAGCTGGGATCATATGTATGTTTATGATGGAGATTCAATATATGCACCTTTAATAGCTGTACTTA
GTGGTTTGATAGTCCCTGAAATAAGGGGCAATGAAACTGTGCCTGAAGTTGTTACTACATCTGGCTATGC
ACTGTTACATTTTTTTAGTGATGCTGCGTATAATCTAACTGGTTTCAACATTTTCTATTCAATCAATTCT
TGTCCTAACAATTGCTCTGGTCATGGGAAGTGTACAACTAGTGTCTCTGTTCCAAGTCAAGTATATTGTG
AATGTGATAAATACTGGAAGGGTGAAGCTTGTGATATTCCTTACTGTAAAGCCAATTGCGGCAGTCCAGA
TCACGGTTACTGTGACCTGACTGGAGAAAAATTATGTGTCTGCAATGATAGTTGGCAAGGTCCTGATTGT
TCTTTGAATGTTCCCTCTACTGAGTCTTACTGGATTCTGCCAAACGTTAAACCCTTCAGTCCTTCTGTAG
GTCGGGCTTCACATAAAGCAGTTTTACACGGGAAATTTATGTGGGTGATTGGTGGATATACTTTTAACTA
CAGTTCTTTTCAAATGGTCCTAAATTACAATTTAGAAAGCAGTATATGGAATGTAGGAACTCCATCAAGG
GGACCTCTCCAGAGATATGGACACTCTCTTGCTTTATATCAGGAAAACATCTTTATGTATGGAGGCAGAA
TTGAAACAAATGATGGCAATGTCACAGATGAATTATGGGTTTTTAACATACATAGTCAGTCATGGAGTAC
AAAAACTCCTACTGTTCTTGGACATGGTCAGCAGTATGCTGTGGAGGGACATTCAGCACATATTATGGAG
TTGGATAGTAGAGATGTTGTCATGATCATAATATTTGGATATTCTGCAATATATGGTTATACAAGCAGCA
TACAGGAATACCATATCTGTGAGTTACTTAAAAATTGTAATTTCTTTATTGATTGGGAATGTTTTTCTCT
TTAA

Translation (467 aa):
METGGRARTGTPQPAAPGVWRARPAGGGGGGASSWLLDGNSWLLCYGFLYLALYAQVSQSKPCERTGSCF
SGRCVNSTCLCDPGWVGDQCQHCQGRFKLTEPSGYLTDGPINYKYKTKCTWLIEGYPNAVLRLRFNHFAT
ECSWDHMYVYDGDSIYAPLIAVLSGLIVPEIRGNETVPEVVTTSGYALLHFFSDAAYNLTGFNIFYSINS
CPNNCSGHGKCTTSVSVPSQVYCECDKYWKGEACDIPYCKANCGSPDHGYCDLTGEKLCVCNDSWQGPDC
SLNVPSTESYWILPNVKPFSPSVGRASHKAVLHGKFMWVIGGYTFNYSSFQMVLNYNLESSIWNVGTPSR
GPLQRYGHSLALYQENIFMYGGRIETNDGNVTDELWVFNIHSQSWSTKTPTVLGHGQQYAVEGHSAHIME
LDSRDVVMIIIFGYSAIYGYTSSIQEYHICELLKNCNFFIDWECFSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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