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Report for CCDS7347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7347.1 Public Homo sapiens 10 SAMD8 24 110 108 CCDS HistoryNCBI Gene:142891Re-query CCDS DB by CCDS ID:7347.1Re-query CCDS DB by GeneID:142891See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7347.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372687.4 ENSP00000361772.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372687.4Link to Ensembl Protein Viewer:ENSP00000361772.3Re-query CCDS DB by Nucleotide ID:ENST00000372687Re-query CCDS DB by Protein ID:ENSP00000361772
Original member Current member NCBI NM_144660.3 NP_653261.1 Accepted alive Link to Nucleotide Sequence:NM_144660.3Link to Protein Sequence:NP_653261.1Re-query CCDS DB by Nucleotide ID:NM_144660Re-query CCDS DB by Protein ID:NP_653261Link to BLAST:NP_653261.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653261.1 326 Q96LT4-2 326 100% 0 0

Chromosomal Locations for CCDS 7347.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75150529 75151106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75164645 75164740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75168541 75168658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75176066 75176254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGCAGGTCCTAATCAACTCTGCATTCGCCGCTGGACTACCAAGCATGTAGCTGTGTGGCTGAAGGATG
AAGGCTTTTTTGAATATGTGGACATTTTATGCAATAAGCACCGACTTGATGGAATCACATTGCTAACATT
GACTGAATATGATCTCCGGTCTCCTCCTCTGGAAATCAAAGTCTTAGGGGACATTAAAAGGTTAATGCTC
TCAGTCCGAAAATTGCAGAAAATACATATTGATGTTTTAGAAGAGATGGGCTACAACAGTGACAGTCCCA
TGGGTTCCATGACCCCTTTCATCAGTGCTCTTCAGAGTACAGACTGGCTCTGTAATGGGGAGCTTTCCCA
TGACTGTGACGGACCCATAACTGACTTGAATTCTGATCAGTACCAGTACATGAATGGTAAAAACAAACAT
TCTGTTCGAAGATTGGACCCAGAATACTGGAAGACTATACTGAGTTGTATATATGTTTTTATAGTATTTG
GATTTACATCTTTCATTATGGTTATAGTCCATGAGCGAGTGCCTGACATGCAGACCTATCCACCACTCCC
AGATATATTCTTAGACAGCGTTCCTAGAATCCCATGGGCCTTTGCCATGACGGAAGTATGTGGCATGATT
CTGTGCTATATTTGGCTCCTGGTTCTTCTTCTTCACAAGCACAGGTCAATACTTCTGCGAAGGCTCTGTA
GTCTGATGGGAACTGTATTCTTGCTTCGCTGCTTTACCATGTTTGTGACCTCCCTCTCCGTGCCAGGACA
ACACCTGCAGTGTACTGGAAAGATATATGGCAGTGTATGGGAGAAATTACATCGAGCCTTTGCCATTTGG
AGTGGCTTTGGTATGACCCTGACTGGCGTTCACACATGTGGAGATTACATGTTTAGTGGCCACACAGTCG
TCCTAACTATGCTGAATTTCTTTGTCACCGAATGTAAGTATCTTTTTAGTGCTTCTATGCGTATTAGGTA
A

Translation (326 aa):
MAGPNQLCIRRWTTKHVAVWLKDEGFFEYVDILCNKHRLDGITLLTLTEYDLRSPPLEIKVLGDIKRLML
SVRKLQKIHIDVLEEMGYNSDSPMGSMTPFISALQSTDWLCNGELSHDCDGPITDLNSDQYQYMNGKNKH
SVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPRIPWAFAMTEVCGMI
LCYIWLLVLLLHKHRSILLRRLCSLMGTVFLLRCFTMFVTSLSVPGQHLQCTGKIYGSVWEKLHRAFAIW
SGFGMTLTGVHTCGDYMFSGHTVVLTMLNFFVTECKYLFSASMRIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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