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Report for CCDS73594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73594.1 Public Homo sapiens 13 ITGBL1 24 110 108 CCDS HistoryNCBI Gene:9358Re-query CCDS DB by CCDS ID:73594.1Re-query CCDS DB by GeneID:9358See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73594.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618057.4 ENSP00000481484.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618057.4Link to Ensembl Protein Viewer:ENSP00000481484.1Re-query CCDS DB by Nucleotide ID:ENST00000618057Re-query CCDS DB by Protein ID:ENSP00000481484
Original member Current member NCBI NM_001271755.2 NP_001258684.1 Accepted alive Link to Nucleotide Sequence:NM_001271755.2Link to Protein Sequence:NP_001258684.1Re-query CCDS DB by Nucleotide ID:NM_001271755Re-query CCDS DB by Protein ID:NP_001258684Link to BLAST:NP_001258684.1

Chromosomal Locations for CCDS 73594.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 101452834 101452931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101453883 101454100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101575424 101575546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101579287 101579427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101583216 101583356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101598153 101598299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101692585 101692701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101706756 101706902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101714438 101714551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 101715563 101715654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGCGTCCCCCAGGCTTCAGGAACTTCTTGCTGCTGGCGTCCTCCCTTCTCTTTGCTGGGTTGTCAGCTG
TTCCTCAAAGCTTCTCGCCATCTCTGAGGAGCTGGCCGGGCGCCGCCTGCAGGCTGTCCCGGGCCGAGTC
GGAGCGACGCTGCCGCGCACCTGGGCAGCCCCCGGGGGCCGCGCTGTGCCACGGCCGGGGCCGCTGCGAC
TGCGGCGTCTGCATCTGCCACGTGACTGAGCCGGGCATGTTCTTCGGGCCCCTGTGTGAGTGCCATGAGT
GGGTGTGCGAGACCTACGACGGGAGCACCTGTGCAGGTACATGTCACTGTGGCAGGTGTAAGTGTGATAA
TTCAGATGGAAGTGGACTTGTGTATGGTAAATTTTGTGAGTGTGACGATAGAGAATGCATAGACGATGAA
ACAGAAGAAATATGTGGAGGCCATGGGAAGTGTTACTGTGGAAACTGCTACTGCAAGGCTGGTTGGCATG
GAGATAAATGTGAATTCCAGTGCGATATCACCCCCTGGGAAAGCAAGCGAAGATGCACGTCTCCAGATGG
CAAAATCTGCAGTAACAGAGGGACTTGTGTATGTGGTGAATGTACCTGTCACGATGTTGATCCGACTGGG
GACTGGGGAGATATTCATGGGGACACCTGTGAATGTGATGAGAGGGACTGTAGAGCTGTCTATGACCGAT
ATTCTGATGACTTCTGTTCAGGTCATGGACAGTGTAATTGCGGAAGATGTGACTGCAAAGCAGGCTGGTA
TGGGAAGAAGTGTGAGCACCCACAGTCCTGCACGCTGTCAGCTGAGGAGAGCATCAGGAAGTGCCAGGGA
AGCTCGGATCTGCCTTGCTCTGGGAGGGGTAAATGTGAATGTGGCAAATGCACCTGCTATCCTCCAGGAG
ATCGCCGGGTGTATGGCAAGACTTGTGAGTGTGATGATCGCCGCTGTGAAGACCTCGATGGTGTGGTCTG
TGGAGGCCACGGCACATGTTCCTGTGGTCGCTGTGTTTGTGAGAGAGGATGGTTTGGAAAGCTCTGCCAA
CATCCGCGGAAGTGTAACATGACGGAAGAACAAAGCAAGAATCTGTGTGAATCAGCAGATGGCATATTGT
GCTCGGGGAAGGGTTCTTGTCATTGTGGGAAGTGCATTTGTTCTGCTGAAGAGTGGTATATTTCTGGGGA
GTTCTGTGACTGTGATGACAGAGACTGCGACAAACATGATGGTCTCATTTGTACAGGGAATGGAATATGT
AGCTGTGGAAACTGTGAATGCTGGGATGGATGGAATGGAAATGCATGTGAAATCTGGCTTGGCTCAGAAT
ATCCTTAA

Translation (445 aa):
MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGAALCHGRGRCD
CGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGTCHCGRCKCDNSDGSGLVYGKFCECDDRECIDDE
TEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICSNRGTCVCGECTCHDVDPTG
DWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKAGWYGKKCEHPQSCTLSAEESIRKCQG
SSDLPCSGRGKCECGKCTCYPPGDRRVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQ
HPRKCNMTEEQSKNLCESADGILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGIC
SCGNCECWDGWNGNACEIWLGSEYP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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