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Report for CCDS73777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73777.1 Public Homo sapiens 15 SLC28A1 24 110 108 CCDS HistoryNCBI Gene:9154Re-query CCDS DB by CCDS ID:73777.1Re-query CCDS DB by GeneID:9154See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73777.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538177.5 ENSP00000443752.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538177.5Link to Ensembl Protein Viewer:ENSP00000443752.1Re-query CCDS DB by Nucleotide ID:ENST00000538177Re-query CCDS DB by Protein ID:ENSP00000443752
Original member Current member NCBI NM_001287761.2 NP_001274690.1 Accepted alive Link to Nucleotide Sequence:NM_001287761.2Link to Protein Sequence:NP_001274690.1Re-query CCDS DB by Nucleotide ID:NM_001287761Re-query CCDS DB by Protein ID:NP_001274690Link to BLAST:NP_001274690.1

Chromosomal Locations for CCDS 73777.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 84887761 84887856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84888772 84888860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84890443 84890534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84894940 84895123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84904097 84904238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84905539 84905652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84908718 84908795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84918524 84918604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84920989 84921069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84923985 84924110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84943445 84943526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84944566 84944664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84944756 84944867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84945125 84945200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGGAGAACGACCCCTCGAGACGAAGAGAGTCCATCTCTCTCACACCTGTGGCCAAGGGTCTGGAGAACA
TGGGGGCTGATTTCTTGGAAAGCCTGGAGGAAGGCCAGCTCCCTAGGAGTGACTTGAGCCCCGCAGAGAT
CAGGAGCAGCTGGAGCGAGGCGGCGCCGAAGCCCTTCTCCAGATGGAGGAACCTGCAGCCAGCCCTGAGA
GCCAGAAGCTTCTGCAGGGAGCACATGCAGCTGTTTCGATGGATCGGCACAGGCCTGCTCTGCACTGGGC
TCTCTGCCTTCCTGCTGGTGGCCTGCCTCCTGGATTTCCAGAGGGCCCTGGCTCTGTTTGTCCTCACCTG
TGTGGTCCTCACCTTCCTGGGCCACCGCCTGCTGAAACGGCTTCTGGGGCCAAAGCTGAGGAGGTTTCTC
AAGCCTCAGGGCCATCCCCGCCTGCTGCTCTGGTTTAAGAGGGGTCTAGCTCTTGCTGCTTTCCTGGGCC
TGGTCCTGTGGCTGTCTCTGGACACCTCCCAGCGGCCTGAGCAACTGGTGTCCTTCGCAGGAATCTGCGT
GTTCGTCGCTCTCCTCTTTGCCTGCTCAAAGCATCATTGCGCAGTGTCCTGGAGGGCCGTGTCTTGGGGA
CTTGGACTGCAGTTTGTACTTGGACTCCTCGTCATCAGAACAGAACCAGGATTCATTGCGTTCGAGTGGC
TGGGCGAGCAGATCCGGATCTTCCTGAGCTACACGAAGGCTGGCTCCAGCTTCGTGTTTGGGGAGGCGCT
GGTCAAGGATGTCTTTGCCTTTCAGGTTCTGCCCATCATTGTCTTTTTCAGCTGTGTCATATCCGTTCTC
TACCACGTGGGCCTCATGCAGTGGGTGATCCTGAAGATTGCCTGGCTGATGCAAGTCACCATGGGCACCA
CAGCCACTGAGACCCTGAGTGTGGCTGGAAACATCTTTGTGAGCCAGACCGAGGCTCCATTACTGATCCG
GCCCTACTTGGCAGACATGACACTCTCTGAAGTCCACGTTGTCATGACCGGAGGTTACGCCACCATTGCT
GGCAGCCTGCTGGGTGCCTACATCTCCTTTGGGGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTG
GATTTGCCAATTTCAGCTCCATTGGGATCATGCTGGGAGGCTTGACCTCCATGGTCCCCCAACGGAAGAG
CGACTTCTCCCAGATAGTGCTCCGGGCGCTCTTCACGGGAGCCTGTGTGTCCCTGGTGAACGCCTGTATG
GCAGGGATCCTCTACATGCCCAGGGGGGCTGAAGTTGACTGCATGTCCCTCTTGAACACGACCCTCAGCA
GCAGTAGCTTTGAGATTTACCAGTGCTGCCGTGAGGCCTTCCAGAGCGTCAATCCAGAGTTCAGCCCAGA
GGCCCTGGACAACTGCTGTCGGTTTTACAACCACACGATCTGTGCACAGTGA

Translation (483 aa):
MENDPSRRRESISLTPVAKGLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFSRWRNLQPALR
ARSFCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVLTFLGHRLLKRLLGPKLRRFL
KPQGHPRLLLWFKRGLALAAFLGLVLWLSLDTSQRPEQLVSFAGICVFVALLFACSKHHCAVSWRAVSWG
LGLQFVLGLLVIRTEPGFIAFEWLGEQIRIFLSYTKAGSSFVFGEALVKDVFAFQVLPIIVFFSCVISVL
YHVGLMQWVILKIAWLMQVTMGTTATETLSVAGNIFVSQTEAPLLIRPYLADMTLSEVHVVMTGGYATIA
GSLLGAYISFGVRAEVLTTFALCGFANFSSIGIMLGGLTSMVPQRKSDFSQIVLRALFTGACVSLVNACM
AGILYMPRGAEVDCMSLLNTTLSSSSFEIYQCCREAFQSVNPEFSPEALDNCCRFYNHTICAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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