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Report for CCDS7383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7383.1 Public Homo sapiens 10 SHLD2 24 110 108 CCDS HistoryNCBI Gene:54537Re-query CCDS DB by CCDS ID:7383.1Re-query CCDS DB by GeneID:54537See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 7383.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298784.5 ENSP00000298784.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000298784.5Link to Ensembl Protein Viewer:ENSP00000298784.1Re-query CCDS DB by Nucleotide ID:ENST00000298784Re-query CCDS DB by Protein ID:ENSP00000298784
Original member Current member NCBI NM_001377158.1 NP_001364087.1 Accepted alive Link to Nucleotide Sequence:NM_001377158.1Link to Protein Sequence:NP_001364087.1Re-query CCDS DB by Nucleotide ID:NM_001377158Re-query CCDS DB by Protein ID:NP_001364087Link to BLAST:NP_001364087.1
Original member Current member NCBI NM_001377159.1 NP_001364088.1 Accepted alive Link to Nucleotide Sequence:NM_001377159.1Link to Protein Sequence:NP_001364088.1Re-query CCDS DB by Nucleotide ID:NM_001377159Re-query CCDS DB by Protein ID:NP_001364088Link to BLAST:NP_001364088.1
Original member Current member NCBI NM_019054.3 NP_061927.2 Accepted alive Link to Nucleotide Sequence:NM_019054.3Link to Protein Sequence:NP_061927.2Re-query CCDS DB by Nucleotide ID:NM_019054Re-query CCDS DB by Protein ID:NP_061927Link to BLAST:NP_061927.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001364087.1 835 Q86V20-1 835 100% 0 0
NP_001364088.1 835 Q86V20-1 835 100% 0 0
NP_061927.2 835 Q86V20-1 835 100% 0 0

Chromosomal Locations for CCDS 7383.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 87151355 87152879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87158048 87158155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87170478 87170672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87170840 87170974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87180075 87180303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87187085 87187200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 87190484 87190683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2508 nt):
ATGAGTGGAGGATCTCAAGTCCACATTTTTTGGGGTGCTCCAATTGCTCCACTGAAAATCACAGTATCAG
AAGACACAGCTTCTTTAATGTCTGTTGCTGACCCCTGGAAAAAAATTCAGCTTTTATACAGTCAACATTC
TTTATATCTGAAGGATGAAAAACAGCACAAAAATCTTGAAAACTATAAAGTCCCAGAATCTATTGGTTCT
CCAGATCTTAGTGGTCATTTCTTAGCAAACTGTATGAATAGACATGTTCATGTGAAAGATGACTTTGTAC
GTTCTGTTTCTGAAACACAGAATATAGAATCCCAGAAGATTCACTCCTCTAGACTGAGTGATATAACTAG
CTCTAATATGCAAATATGTGGATTTAAAAGCACAGTTCCGCATTTCACCGAAGAAGAAAAGTATCAAAAG
CTTCTCAGTGAAAATAAAATTAGAGATGAACAGCCTAAACATCAGCCAGATATATGTGGTAAGAACTTTA
ACACAAATTTGTTTCAGTTGGGCCATAAATGTGCAGCTGTGTTGGATTTGGTTTGTAGTACTGAAAAAAT
TAATATAGGGCCTGAAGTGGTACAAAGAGAGTGTGTGCCAACAGAATATCATGAAATACAAAACCAGTGT
TTGGGATTATTTTCCTCGAACGCAGTAGATAAGTCAAGGTCTGAAGCAGCAGTTAGGAAGGTCTCAGACC
TTAAAATATCAACTGATACAGAATTTCTCAGTATAATTACCTCCAGCCAGGTTGCTTTTTTAGCTCAAAA
GAAAGATAAAAGGCGGAGTCCTGTAAATAAAGGGAATGTAAACATGGAGACTGAACCAAAGGCAAGTTAC
GGGGAGATAAGAATACCTGAAGAGAATTCGATTCAGCTTGATGGTTTTACAGAAGCATATGAAAGTGGAC
AAAACCAAGCATATTCCCTTGAACTTTTTAGTCCTGTTTGTCCTAAAACAGAAAATAGCCGCATTCACAT
AAACTCTGATAAAGGTCTTGAAGAACATACAGGATCTCAAGAACTTTTCAGTTCTGAAGATGAACTGCCA
CCAAATGAGATACGTATTGAGTTGTGTAGCTCAGGAATACTGTGTTCCCAACTAAATACCTTCCACAAAA
GTGCTATTAAAAGAAGCTGTACCTCTGAAGATAAAGTGGGCCAGTCTGAAGCTCTATCTAGAGTCCTTCA
AGTAGCTAAGAAAATGAAGTTGATTTCTAATGGAGGAGATTCTGCTGTAGAAATGGATCGGAGAAATGTG
TCTGAATTTAAGAGTATTAAAAAAACATCATTAATAAAAAACTGTGATTCTAAAAGCCAGAAGTATAATT
GTTTAGTCATGGTGCTATCTCCATGCCATGTGAAGGAAATAAACATAAAATTCGGACCAAATTCTGGCTC
TAAAGTGCCTTTAGCAACAGTTACAGTAATTGATCAATCAGAAACTAAGAAGAAGGTTTTTCTGTGGAGG
ACTGCAGCATTTTGGGCATTTACAGTGTTTCTTGGAGATATAATTTTACTCACAGATGTTGTTATTCATG
AGGACCAATGGATTGGCGAGACAGTACTACAATCAACATTTAGCAGTCAGTTATTAAATCTTGGGAGTTA
TTCATCTATTCAGCCTGAAGAATATTCCAGTGTAGTTAGTGAAGTTGTACTTCAAGACTTACTGGCATAT
GTGTCCTCAAAACATTCCTACCTCAGAGATCTTCCTCCGAGGCAGCCTCAGAGGGTGAACAGTATAGACT
TTGTAGAATTGGAGCACCTTCAACCTGATGTATTAGTCCACGCAGTACTAAGAGTTGTTGATTTCACTAT
ACTGACAGAGGCAGTATACAGTTATAGAGGACAGAAGCAGAAAAAAGTTATGTTAACAGTGGAACAGGCC
CAAGATCAACATTATGCGCTTGTATTATGGGGTCCTGGAGCAGCCTGGTACCCTCAACTTCAAAGGAAAA
AAGGAGTGGTTCTGATTAAAGCCCAGATTTCAGAGCTGGCATTTCCTATTACAGCATCTCAGAAGATAGC
GCTAAATGCTCACAGTTCTCTGAAGAGTATTTTTTCTTCTCTTCCCAACATCGTATATACTGGTTGTGCA
AAATGTGGATTGGAACTAGAAACAGATGAGAACAGGATCTACAAACAATGTTTTAGCTGCTTGCCATTTA
CTATGAAGAAAATATATTATAGGCCAGCGTTAATGACTGCCATTGATGGAAGACATGATGTTTGTATCCG
TGTAGAATCAAAGCTGATAGAGAAGATTCTTCTCAACATTTCTGCAGACTGCCTCAACAGAGTGATAGTT
CCTTCCTCAGAGATCACCTATGGGATGGTCGTGGCAGACCTGTTCCACTCCTTGTTGGCAGTCAGCGCAG
AACCTTGTGTATTAAAGATTCAGAGCCTTTTTGTGTTAGATGAAAACAGCTATCCATTACAACAAGATTT
CTCCCTCCTGGATTTTTATCCTGACATTGTAAAGCATGGAGCCAATGCCCGTCTCTGA

Translation (835 aa):
MSGGSQVHIFWGAPIAPLKITVSEDTASLMSVADPWKKIQLLYSQHSLYLKDEKQHKNLENYKVPESIGS
PDLSGHFLANCMNRHVHVKDDFVRSVSETQNIESQKIHSSRLSDITSSNMQICGFKSTVPHFTEEEKYQK
LLSENKIRDEQPKHQPDICGKNFNTNLFQLGHKCAAVLDLVCSTEKINIGPEVVQRECVPTEYHEIQNQC
LGLFSSNAVDKSRSEAAVRKVSDLKISTDTEFLSIITSSQVAFLAQKKDKRRSPVNKGNVNMETEPKASY
GEIRIPEENSIQLDGFTEAYESGQNQAYSLELFSPVCPKTENSRIHINSDKGLEEHTGSQELFSSEDELP
PNEIRIELCSSGILCSQLNTFHKSAIKRSCTSEDKVGQSEALSRVLQVAKKMKLISNGGDSAVEMDRRNV
SEFKSIKKTSLIKNCDSKSQKYNCLVMVLSPCHVKEINIKFGPNSGSKVPLATVTVIDQSETKKKVFLWR
TAAFWAFTVFLGDIILLTDVVIHEDQWIGETVLQSTFSSQLLNLGSYSSIQPEEYSSVVSEVVLQDLLAY
VSSKHSYLRDLPPRQPQRVNSIDFVELEHLQPDVLVHAVLRVVDFTILTEAVYSYRGQKQKKVMLTVEQA
QDQHYALVLWGPGAAWYPQLQRKKGVVLIKAQISELAFPITASQKIALNAHSSLKSIFSSLPNIVYTGCA
KCGLELETDENRIYKQCFSCLPFTMKKIYYRPALMTAIDGRHDVCIRVESKLIEKILLNISADCLNRVIV
PSSEITYGMVVADLFHSLLAVSAEPCVLKIQSLFVLDENSYPLQQDFSLLDFYPDIVKHGANARL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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