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Report for CCDS7475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7475.1 Public Homo sapiens 10 HPS1 24 110 108 CCDS HistoryNCBI Gene:3257Re-query CCDS DB by CCDS ID:7475.1Re-query CCDS DB by GeneID:3257See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7475.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325103.10 ENSP00000326649.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000325103.10Link to Ensembl Protein Viewer:ENSP00000326649.6Re-query CCDS DB by Nucleotide ID:ENST00000325103Re-query CCDS DB by Protein ID:ENSP00000326649
Original member Current member EBI ENST00000361490.9 ENSP00000355310.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361490.9Link to Ensembl Protein Viewer:ENSP00000355310.4Re-query CCDS DB by Nucleotide ID:ENST00000361490Re-query CCDS DB by Protein ID:ENSP00000355310
Original member Current member EBI ENST00000699142.1 ENSP00000514159.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699142.1Link to Ensembl Protein Viewer:ENSP00000514159.1Re-query CCDS DB by Nucleotide ID:ENST00000699142Re-query CCDS DB by Protein ID:ENSP00000514159
Original member Current member EBI ENST00000699145.1 ENSP00000514162.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699145.1Link to Ensembl Protein Viewer:ENSP00000514162.1Re-query CCDS DB by Nucleotide ID:ENST00000699145Re-query CCDS DB by Protein ID:ENSP00000514162
Original member Current member NCBI NM_000195.5 NP_000186.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000195.5Link to Protein Sequence:NP_000186.2Re-query CCDS DB by Nucleotide ID:NM_000195Re-query CCDS DB by Protein ID:NP_000186Link to BLAST:NP_000186.2
Original member Current member NCBI NM_001322476.2 NP_001309405.1 Accepted alive Link to Nucleotide Sequence:NM_001322476.2Link to Protein Sequence:NP_001309405.1Re-query CCDS DB by Nucleotide ID:NM_001322476Re-query CCDS DB by Protein ID:NP_001309405Link to BLAST:NP_001309405.1
Original member Current member NCBI NM_001322477.2 NP_001309406.1 Accepted alive Link to Nucleotide Sequence:NM_001322477.2Link to Protein Sequence:NP_001309406.1Re-query CCDS DB by Nucleotide ID:NM_001322477Re-query CCDS DB by Protein ID:NP_001309406Link to BLAST:NP_001309406.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000186.2 700 Q92902-1 700 100% 0 0
NP_001309405.1 700 Q92902-1 700 100% 0 0
NP_001309406.1 700 Q92902-1 700 100% 0 0

Chromosomal Locations for CCDS 7475.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 98417564 98417726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98418175 98418257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98420045 98420158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98422369 98422513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98423603 98423668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98423753 98423887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98424313 98424374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98425541 98425720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98425818 98425985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98427215 98427264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98429573 98429642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98429791 98429889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98430571 98430670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98431131 98431291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98433983 98434091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98435272 98435414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98435635 98435772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 98443124 98443240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGAAGTGCGTCTTGGTGGCCACTGAGGGCGCAGAGGTCCTCTTCTACTGGACAGATCAGGAGTTTGAAG
AGAGTCTCCGGCTGAAGTTCGGGCAGTCAGAGAATGAGGAAGAAGAGCTCCCTGCCCTGGAGGACCAGCT
CAGCACCCTCCTAGCCCCGGTCATCATCTCCTCCATGACGATGCTGGAGAAGCTCTCGGACACCTACACC
TGCTTCTCCACGGAAAATGGCAACTTCCTGTATGTCCTTCACCTGTTTGGAGAATGCCTGTTCATTGCCA
TCAATGGTGACCACACCGAGAGCGAGGGGGACCTGCGGCGGAAGCTGTATGTGCTCAAGTACCTGTTTGA
AGTGCACTTTGGGCTGGTGACTGTGGACGGTCATCTTATCCGAAAGGAGCTGCGGCCCCCAGACCTGGCG
CAGCGTGTCCAGCTGTGGGAGCACTTCCAGAGCCTGCTGTGGACCTACAGCCGCCTGCGGGAGCAGGAGC
AGTGCTTCGCCGTGGAGGCCCTGGAGCGACTGATTCACCCCCAGCTCTGTGAGCTGTGCATAGAGGCGCT
GGAGCGGCACGTCATCCAGGCTGTCAACACCAGCCCCGAGCGGGGAGGCGAGGAGGCCCTGCATGCCTTC
CTGCTCGTGCACTCCAAGCTGCTGGCATTCTACTCTAGCCACAGTGCCAGCTCCCTGCGCCCGGCCGACC
TGCTTGCCCTCATCCTCCTGGTTCAGGACCTCTACCCCAGCGAGAGCACAGCAGAGGACGACATTCAGCC
TTCCCCGCGGAGGGCCCGGAGCAGCCAGAACATCCCCGTGCAGCAGGCCTGGAGCCCTCACTCCACGGGC
CCAACTGGGGGGAGCTCTGCAGAGACGGAGACAGACAGCTTCTCCCTCCCTGAGGAGTACTTCACACCAG
CTCCTTCCCCTGGCGATCAGAGCTCAGGTAGCACCATCTGGCTGGAGGGGGGCACCCCCCCCATGGATGC
CCTTCAGATAGCAGAGGACACCCTCCAAACACTGGTTCCCCACTGCCCTGTGCCTTCCGGCCCCAGAAGG
ATCTTCCTGGATGCCAACGTGAAGGAAAGCTACTGCCCCCTAGTGCCCCACACCATGTACTGCCTGCCCC
TGTGGCAGGGCATCAACCTGGTGCTCCTGACCAGGAGCCCCAGCGCGCCCCTGGCCCTGGTTCTGTCCCA
GCTGATGGATGGCTTCTCCATGCTGGAGAAGAAGCTGAAGGAAGGGCCGGAGCCCGGGGCCTCCCTGCGC
TCCCAGCCCCTCGTGGGAGACCTGCGCCAGAGGATGGACAAGTTTGTCAAGAATCGAGGGGCACAGGAGA
TTCAGAGCACCTGGCTGGAGTTTAAGGCCAAGGCTTTCTCCAAAAGTGAGCCCGGATCCTCCTGGGAGCT
GCTCCAGGCATGTGGGAAGCTGAAGCGGCAGCTCTGCGCCATCTACCGGCTGAACTTTCTGACCACAGCC
CCCAGCAGGGGAGGCCCACACCTGCCCCAGCACCTGCAGGACCAAGTGCAGAGGCTCATGCGGGAGAAGC
TGACGGACTGGAAGGACTTCTTGCTGGTGAAGAGCAGGAGGAACATCACCATGGTGTCCTACCTAGAAGA
CTTCCCAGGCTTGGTGCACTTCATCTATGTGGACCGCACCACTGGGCAGATGGTGGCGCCTTCCCTCAAC
TGCAGTCAAAAGACCTCGTCGGAGTTGGGCAAGGGGCCGCTGGCTGCCTTTGTCAAAACTAAGGTCTGGT
CTCTGATCCAGCTGGCGCGCAGATACCTGCAGAAGGGCTACACCACGCTGCTGTTCCAGGAGGGGGATTT
CTACTGCTCCTACTTCCTGTGGTTCGAGAATGACATGGGGTACAAACTCCAGATGATCGAGGTGCCCGTC
CTCTCCGACGACTCAGTGCCTATCGGCATGCTGGGAGGAGACTACTACAGGAAGCTCCTGCGCTACTACA
GCAAGAACCGCCCAACCGAGGCTGTCAGGTGCTACGAGCTGCTGGCCCTGCACCTGTCTGTCATCCCCAC
TGACCTGCTGGTGCAGCAGGCCGGCCAGCTGGCCCGGCGCCTCTGGGAGGCCTCCCGTATCCCCCTGCTC
TAG

Translation (700 aa):
MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMTMLEKLSDTYT
CFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHFGLVTVDGHLIRKELRPPDLA
QRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLCELCIEALERHVIQAVNTSPERGGEEALHAF
LLVHSKLLAFYSSHSASSLRPADLLALILLVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTG
PTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRR
IFLDANVKESYCPLVPHTMYCLPLWQGINLVLLTRSPSAPLALVLSQLMDGFSMLEKKLKEGPEPGASLR
SQPLVGDLRQRMDKFVKNRGAQEIQSTWLEFKAKAFSKSEPGSSWELLQACGKLKRQLCAIYRLNFLTTA
PSRGGPHLPQHLQDQVQRLMREKLTDWKDFLLVKSRRNITMVSYLEDFPGLVHFIYVDRTTGQMVAPSLN
CSQKTSSELGKGPLAAFVKTKVWSLIQLARRYLQKGYTTLLFQEGDFYCSYFLWFENDMGYKLQMIEVPV
LSDDSVPIGMLGGDYYRKLLRYYSKNRPTEAVRCYELLALHLSVIPTDLLVQQAGQLARRLWEASRIPLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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