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Report for CCDS7500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7500.1 Public Homo sapiens 10 SLF2 24 110 108 CCDS HistoryNCBI Gene:55719Re-query CCDS DB by CCDS ID:7500.1Re-query CCDS DB by GeneID:55719See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7500.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238961.9 ENSP00000238961.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000238961.9Link to Ensembl Protein Viewer:ENSP00000238961.3Re-query CCDS DB by Nucleotide ID:ENST00000238961Re-query CCDS DB by Protein ID:ENSP00000238961
Original member Current member NCBI NM_018121.4 NP_060591.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018121.4Link to Protein Sequence:NP_060591.3Re-query CCDS DB by Nucleotide ID:NM_018121Re-query CCDS DB by Protein ID:NP_060591Link to BLAST:NP_060591.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060591.3 1173 Q8IX21-1 1173 100% 0 0

Chromosomal Locations for CCDS 7500.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 100913111 100913250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100915999 100916042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100916570 100917300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100918384 100918441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100923975 100924972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100925949 100926019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100929317 100929439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100929830 100929997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100930976 100931078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100937402 100937477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100938595 100938736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100944026 100944128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100945330 100945506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100947039 100947136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100947760 100947847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100950076 100950207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100950676 100950753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100956451 100956537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100959428 100959496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 100961877 100961912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3522 nt):
ATGACAAGGCGCTGCATGCCCGCTAGGCCAGGTTTCCCCTCATCCCCAGCCCCGGGGTCGTCGCCCCCGC
GCTGCCATCTGAGACCCGGTAGTACCGCCCATGCTGCAGCGGGAAAGAGAACAGAGAGTCCTGGGGACAG
GAAGCAGTCAATTATAGATTTCTTCAAACCAGCTTCAAAACAAGACAGACACATGTTGGATTCACCACAA
AAATCAAACATCAAATATGGAGGAAGTAGATTGTCTATCACTGGGACAGAGCAGTTTGAAAGGAAACTAT
CCTCACCAAAAGAATCTAAACCCAAAAGGGTGCCACCAGAAAAGAGCCCTATTATAGAAGCTTTCATGAA
AGGTGTTAAAGAGCACCATGAAGATCATGGTATACATGAGTCACGTCGGCCTTGTCTGTCACTAGCCTCC
AAATATTTAGCCAAAGGAACAAATATCTATGTTCCTTCTTCATATCACTTGCCAAAGGAGATGAAGTCAC
TAAAGAAAAAACATCGATCCCCAGAGAGAAGGAAGTCACTATTCATTCATGAAAATAATGAGAAGAATGA
TAGAGATCGAGGCAAAACCAATGCAGACTCCAAAAAGCAGACCACAGTGGCAGAAGCTGACATCTTCAAT
AACAGCTCCAGAAGCCTTAGCAGCAGGAGCAGCCTGTCCAGGCACCACCCGGAAGAAAGCCCACTGGGAG
CTAAATTCCAGTTGTCACTAGCTTCTTACTGCAGAGAACGAGAACTAAAGAGGTTGAGAAAGGAGCAAAT
GGAGCAGAGAATCAACTCCGAGAATTCTTTCTCAGAAGCAAGCAGTCTTTCCTTAAAATCTAGTATAGAA
AGAAAATATAAACCAAGGCAGGAACAAAGGAAACAGAATGACATCATACCTGGAAAAAATAATCTGTCAA
ATGTGGAAAATGGACATCTCTCAAGAAAAAGATCCTCTTCTGATTCATGGGAACCTACTTCAGCAGGCTC
TAAGCAGAATAAATTCCCTGAAAAAAGAAAAAGGAACTCTGTGGACTCAGATCTGAAAAGCACAAGAGAA
TCTATGATACCAAAAGCAAGAGAGTCCTTCCTTGAGAAGCGTCCTGATGGACCACATCAGAAAGAAAAAT
TTATAAAACATATTGCACTGAAGACACCTGGTGATGTGTTGCGCTTAGAAGATATATCCAAGGAACCGAG
TGATGAAACTGATGGCTCTTCTGCAGGCTTGGCACCTTCAAATTCTGGCAATTCTGGCCACCATTCTACC
AGGAATAGTGACCAAATCCAAGTGGCAGGTACCAAGGAGACTAAGATGCAGAAACCCCACTTACCTTTAT
CTCAGGAAAAGTCTGCAATTAAAAAAGCTAGCAACCTTCAGAAAAATAAAACCGCTAGCTCCACGACAAA
GGAGAAGGAGACAAAACTACCTTTACTTTCCCGTGTTCCAAGTGCTGGTTCCTCTCTAGTACCATTAAAT
GCTAAAAATTGTGCTCTTCCAGTTTCTAAAAAAGATAAAGAGCGTTCCTCATCTAAAGAATGTTCTGGGC
ATTCTACAGAATCCACCAAACACAAGGAACACAAAGCAAAGACTAATAAGGCCGATTCTAATGTATCTTC
AGGGAAAATTTCTGGGGGACCTTTGCGCTCAGAATATGGCACTCCTACAAAGTCTCCCCCTGCTGCTTTG
GAAGTTGTGCCATGTATCCCAAGCCCTGCAGCACCTTCAGATAAAGCCCCTTCAGAAGGAGAGAGTTCAG
GAAATTCCAATGCAGGTAGCAGTGCACTGAAAAGAAAACTAAGGGGTGATTTTGATAGTGATGAAGAAAG
TTTAGGTTACAACCTAGACAGTGATGAGGAAGAGGAAACATTAAAGTCACTGGAAGAAATAATGGCTTTG
AACTTCAATCAGACTCCTGCAGCTACAGGAAAGCCTCCTGCTCTTTCCAAGGGGCTTAGATCTCAGTCAT
CAGACTATACAGGACATGTTCATCCTGGAACTTACACAAATACCTTAGAACGTCTAGTGAAGGAAATGGA
AGACACACAAAGGCTAGATGAACTGCAGAAGCAACTACAAGAAGACATAAGGCAAGGCCGAGGCATTAAA
TCCCCAATCAGAATTGGAGAAGAAGACAGTACAGATGATGAGGATGGCCTCTTAGAAGAGCACAAGGAAT
TTCTAAAGAAATTTTCAGTTACAATTGATGCTATTCCTGATCATCATCCAGGTGAAGAAATATTTAATTT
CCTCAATTCTGGAAAAATTTTCAATCAGTATACCTTGGATTTAAGAGACTCTGGTTTTATTGGACAAAGT
GCTGTAGAAAAACTTATTCTTAAATCGGGAAAAACAGATCAGATTTTTTTGACAACACAAGGTTTCCTTA
CGTCTGCTTATCACTATGTCCAGTGTCCTGTCCCTGTGTTAAAGTGGCTGTTTCGGATGATGTCAGTTCA
TACAGACTGTATTGTGTCAGTGCAGATTTTAAGTACATTGATGGAAATAACAATTAGAAATGATACCTTC
AGTGACTCACCAGTTTGGCCATGGATCCCATCATTGTCTGATGTAGCAGCTGTGTTTTTCAATATGGGGA
TTGATTTTAGATCTTTGTTTCCCCTGGAGAATCTTCAGCCAGACTTTAATGAAGACTATCTAGTTTCTGA
AACACAGACAACATCAAGGGGGAAAGAAAGTGAAGATTCATCTTATAAGCCAATTTTTTCAACACTTCCT
GAAACCAACATTTTAAATGTGGTTAAGTTTCTAGGCTTGTGTACATCTATACATCCAGAAGGTTACCAGG
ATCGTGAAATAATGTTGCTGATTTTAATGTTATTTAAAATGAGTTTGGAAAAACAGCTGAAACAGATTCC
TTTAGTAGACTTTCAAAGCCTCCTGATAAACCTGATGAAAAACATCAGAGATTGGAACACAAAGGTGCCT
GAACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCACAACCTCCTGTGGTTGGTACAGCTGGTCC
CTAATTGGACATCACGTGGAAGGCAACTGAGACAGTGCCTCAGTCTAGTGATTATTTCAAAGCTTTTGGA
TGAGAAACACGAAGATGTTCCTAATGCCAGTAATCTGCAGGTATCAGTCCTACATCGCTATCTTGTGCAG
ATGAAGCCTTCTGATTTGTTAAAGAAAATGGTCTTGAAGAAAAAGGCTGAACAACCAGATGGCATTATTG
ATGACAGTCTTCATTTAGAACTTGAAAAGCAGGCATATTACCTGACCTACATTCTTCTTCATTTAGTCGG
TGAAGTTAGTTGTTCTCATTCTTTTTCTTCTGGACAACGGAAACACTTTGTGCTACTCTGTGGGGCTTTG
GAAAAGCATGTTAAATGTGATATTAGGGAAGATGCAAGACTTTTTTACAGAACTAAGGTGAAAGACTTGG
TCGCCAGGATACATGGAAAATGGCAGGAAATAATCCAGAACTGTCGGCCTACTCAGGGGCAGCTTCATGA
CTTCTGGGTACCAGATTCTTAA

Translation (1173 aa):
MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRKQSIIDFFKPASKQDRHMLDSPQ
KSNIKYGGSRLSITGTEQFERKLSSPKESKPKRVPPEKSPIIEAFMKGVKEHHEDHGIHESRRPCLSLAS
KYLAKGTNIYVPSSYHLPKEMKSLKKKHRSPERRKSLFIHENNEKNDRDRGKTNADSKKQTTVAEADIFN
NSSRSLSSRSSLSRHHPEESPLGAKFQLSLASYCRERELKRLRKEQMEQRINSENSFSEASSLSLKSSIE
RKYKPRQEQRKQNDIIPGKNNLSNVENGHLSRKRSSSDSWEPTSAGSKQNKFPEKRKRNSVDSDLKSTRE
SMIPKARESFLEKRPDGPHQKEKFIKHIALKTPGDVLRLEDISKEPSDETDGSSAGLAPSNSGNSGHHST
RNSDQIQVAGTKETKMQKPHLPLSQEKSAIKKASNLQKNKTASSTTKEKETKLPLLSRVPSAGSSLVPLN
AKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVSSGKISGGPLRSEYGTPTKSPPAAL
EVVPCIPSPAAPSDKAPSEGESSGNSNAGSSALKRKLRGDFDSDEESLGYNLDSDEEEETLKSLEEIMAL
NFNQTPAATGKPPALSKGLRSQSSDYTGHVHPGTYTNTLERLVKEMEDTQRLDELQKQLQEDIRQGRGIK
SPIRIGEEDSTDDEDGLLEEHKEFLKKFSVTIDAIPDHHPGEEIFNFLNSGKIFNQYTLDLRDSGFIGQS
AVEKLILKSGKTDQIFLTTQGFLTSAYHYVQCPVPVLKWLFRMMSVHTDCIVSVQILSTLMEITIRNDTF
SDSPVWPWIPSLSDVAAVFFNMGIDFRSLFPLENLQPDFNEDYLVSETQTTSRGKESEDSSYKPIFSTLP
ETNILNVVKFLGLCTSIHPEGYQDREIMLLILMLFKMSLEKQLKQIPLVDFQSLLINLMKNIRDWNTKVP
ELCLGINELSSHPHNLLWLVQLVPNWTSRGRQLRQCLSLVIISKLLDEKHEDVPNASNLQVSVLHRYLVQ
MKPSDLLKKMVLKKKAEQPDGIIDDSLHLELEKQAYYLTYILLHLVGEVSCSHSFSSGQRKHFVLLCGAL
EKHVKCDIREDARLFYRTKVKDLVARIHGKWQEIIQNCRPTQGQLHDFWVPDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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