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Report for CCDS75091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75091.1 Public Homo sapiens 4 FAM53A 24 110 108 CCDS HistoryNCBI Gene:152877Re-query CCDS DB by CCDS ID:75091.1Re-query CCDS DB by GeneID:152877See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75091.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000489363.5 ENSP00000419044.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000489363.5Link to Ensembl Protein Viewer:ENSP00000419044.1Re-query CCDS DB by Nucleotide ID:ENST00000489363Re-query CCDS DB by Protein ID:ENSP00000419044
Original member Current member NCBI NM_001297435.1 NP_001284364.1 Accepted alive Link to Nucleotide Sequence:NM_001297435.1Link to Protein Sequence:NP_001284364.1Re-query CCDS DB by Nucleotide ID:NM_001297435Re-query CCDS DB by Protein ID:NP_001284364Link to BLAST:NP_001284364.1

Chromosomal Locations for CCDS 75091.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 1641561 1641607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1644189 1644342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1654978 1655723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1657408 1657468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1668667 1668741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGTCACACTCATCACTGAGAAGCTGCAGAGCCAGAGCCTGGACGACCTCACCTGCAAGGCGGAGGCTG
GCCCGTTGCAGTATTCTGCGGAAACCCTGAACAAGAGCGGTCGTCTGTTCCCTTTGGAGCTCAACGACCA
GAGTCCCTGGAAGGTCTTCAGTGGAGGACCGCCCGTCAGAAGCCAGGCAGCCACGGGCCCTGATTTCTCC
TTCCTGCCGGGCCTGTCTGCTGCCGCTCACACCATGGGTCTTCAGTGGCAGCCACAGTCCCCGCGCCCAG
GCGCAGGCCTGGGTGCAGCCAGCACCGTGGACCCCAGTGAAAGCACAGGCTCGTCCACGGCCCCACCGAC
CAAGCGGCATTGCCGGTCCTTGTCAGAACCCGAGGAGCTTGTGCGCTGCCGGTCCCCCTGGCGCCCCGGC
AGCTCCAAGGTCTGGACTCCAGTCTCCAAGAGGCGGTGCGACAGCGGCGGGAGTGCCACGCGGCAGGGAA
GCCCCGGCGCCGTCCTGCCGAGGAGTGCTGTGTGGTCGACCGGTCCCACCTCGCCCGCCACGCCCCGGCC
GTCCTCCGCCAGCGGCGGCTTCGTGGACAGCAGCGAGGGCAGTGCGGGCTCAGGCCCGCTCTGGTGTTCC
GCGGAGTCCTGCTTGCCCTCCACGAGGCGCCGCCCGTCCCTCTCACAGGAGCGACTCGCGGGTGCGGGCA
CTCCCCTGCCCTGGGCCAGCAGCAGCCCCACGTCCACGCCTGCGCTGGGCGGGCGCCGTGGGCTGCTCCG
GTGCCGCTCACAGCCTTGCGTGCTCAGTGGGAAGAGGAGCCGGCGCAAACGGAGGCGTGAGGAGGACGCC
AGGTGGACACGCCCATCCTTGGACTTCCTGAAAATGACCCAGCCGCACAGCTGTGCCCGCGAGTGCGAGT
CCCGCGTCCGAGGCCTCGGCGTGAGCTTACAGCATCTGTCGGGTCCGAGCAGTCAGTCCAGAGGGTCGAC
TCTGAATGAAAACAAAACGCCGTGGTTTGAAATGGAAGGAAACCTGGCCCCTGAAGACTTTAAAAAATTC
AAAAAGCCTTTGCTCCCTCAATTACGAAGATGA

Translation (360 aa):
MVTLITEKLQSQSLDDLTCKAEAGPLQYSAETLNKSGRLFPLELNDQSPWKVFSGGPPVRSQAATGPDFS
FLPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPG
SSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCS
AESCLPSTRRRPSLSQERLAGAGTPLPWASSSPTSTPALGGRRGLLRCRSQPCVLSGKRSRRKRRREEDA
RWTRPSLDFLKMTQPHSCARECESRVRGLGVSLQHLSGPSSQSRGSTLNENKTPWFEMEGNLAPEDFKKF
KKPLLPQLRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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