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Report for CCDS75113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75113.1 Public Homo sapiens 4 SEL1L3 24 110 108 CCDS HistoryNCBI Gene:23231Re-query CCDS DB by CCDS ID:75113.1Re-query CCDS DB by GeneID:23231See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75113.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264868.9 ENSP00000264868.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000264868.9Link to Ensembl Protein Viewer:ENSP00000264868.5Re-query CCDS DB by Nucleotide ID:ENST00000264868Re-query CCDS DB by Protein ID:ENSP00000264868
Original member Current member NCBI NM_001297592.2 NP_001284521.1 Accepted alive Link to Nucleotide Sequence:NM_001297592.2Link to Protein Sequence:NP_001284521.1Re-query CCDS DB by Nucleotide ID:NM_001297592Re-query CCDS DB by Protein ID:NP_001284521Link to BLAST:NP_001284521.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284521.1 1097 Q68CR1-2 1097 100% 0 0

Chromosomal Locations for CCDS 75113.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 25748425 25748564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25757534 25757606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25757688 25757790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25758941 25759068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25765326 25765435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25767525 25767609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25767740 25767830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25776277 25776360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25779076 25779203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25782242 25782418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25784228 25784290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25788224 25788364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25790455 25790574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25802283 25802462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25804541 25804752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25818138 25818278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25819808 25819940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25821996 25822128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25830098 25830156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25832995 25833110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25833448 25833569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25835197 25835323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25847294 25847864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25863456 25863512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3294 nt):
ATGGCGCCCCGGCCAAAAAAGCAACCAGACAAAAACCCATTGCACGGGCGGGAACTGAATGTTGTACCAT
CTTTGGGTAGGCAGACTTCCCTGACGACATCAGTGATACCCAAAGCTGAGCAGAGCGTGGCTTACAAAGA
CTTTATTTATTTTACTGTCTTTGAAGGAAACGTTCGCAACGTTTCTGAAGTCTCGGTTGAGTATTTATGC
TCTCAGCCTTGTGTTGTCAATTTGGAAGCAGTTGTTTCATCTGAGTTCAGAAGTAGCATTCCCGTGTACA
AAAAAAGGTGGAAGAATGAGAAACATCTTCACACCAGCAGGACACAAATAGTACATGTGAAATTTCCAAG
CATTATGGTTTACAGAGATGATTATTTCATCAGACATTCCATCTCTGTATCTGCAGTGATAGTACGCGCC
TGGATTACTCACAAATACAGTGGCAGAGACTGGAATGTTAAATGGGAGGAAAACTTGCTCCATGCTGTAG
CAAAGAATTATACCCTCCTGCAGACCATCCCGCCTTTTGAACGCCCTTTCAAAGATCATCAAGTGTGCCT
TGAGTGGAACATGGGTTATATTTGGAACCTTCGGGCAAACAGGATTCCACAGTGTCCTCTGGAAAATGAT
GTGGTTGCCCTGCTTGGCTTTCCTTATGCCTCCAGTGGAGAAAACACAGGCATTGTCAAGAAGTTCCCGA
GGTTTCGGAACCGAGAGCTGGAGGCCACTCGACGCCAGAGGATGGATTACCCAGTGTTTACTGTTTCATT
GTGGCTTTATTTACTCCATTATTGCAAGGCCAACCTCTGTGGGATTCTGTACTTTGTTGACTCTAATGAG
ATGTACGGCACACCTTCTGTATTTCTTACGGAAGAGGGCTATTTGCATATTCAGATGCATCTTGTCAAAG
GGGAAGACCTTGCTGTAAAAACTAAATTCATCATACCTTTGAAGGAGTGGTTTCGACTGGATATCTCTTT
TAACGGAGGCCAGATAGTAGTAACCACTAGCATTGGACAGGATTTGAAAAGCTACCACAATCAGACCATT
AGCTTCCGGGAGGATTTCCATTATAATGACACAGCTGGGTACTTCATTATTGGAGGGAGCAGGTATGTGG
CTGGCATTGAAGGGTTTTTTGGACCCCTGAAGTACTATCGCCTTCGCAGTCTGCACCCCGCCCAGATTTT
TAATCCCCTCCTTGAGAAGCAACTTGCTGAACAAATCAAGTTATATTATGAAAGGTGTGCTGAGGTTCAA
GAAATAGTATCTGTGTATGCATCTGCAGCAAAGCACGGGGGCGAGAGACAAGAAGCATGCCACCTCCACA
ACTCCTACCTGGACCTCCAGCGCAGGTATGGGAGACCCTCGATGTGCAGAGCCTTCCCCTGGGAGAAGGA
GCTGAAAGACAAACACCCCAGCTTGTTCCAGGCATTGCTGGAGATGGATCTGCTGACCGTGCCAAGGAAC
CAAAATGAATCTGTATCAGAAATCGGTGGGAAGATATTTGAGAAGGCTGTAAAGAGACTCTCTAGCATTG
ATGGTCTTCACCAAATTAGCTCTATCGTCCCCTTTCTGACGGATTCCAGCTGCTGTGGATACCATAAAGC
ATCCTACTACCTTGCAGTCTTTTATGAGACTGGATTAAATGTTCCTCGGGATCAGCTGCAGGGCATGTTG
TATAGTTTGGTTGGAGGCCAGGGGAGTGAGAGGCTGTCTTCAATGAATCTTGGGTATAAACACTACCAGG
GTATTGACAACTACCCCCTGGACTGGGAACTGTCGTATGCCTACTACAGCAACATTGCCACCAAGACACC
CCTTGACCAGCACACACTGCAAGGAGATCAGGCATATGTTGAAACAATTAGACTAAAAGATGATGAAATA
CTCAAGGTACAAACCAAAGAAGATGGAGATGTCTTTATGTGGTTGAAGCATGAAGCTACCCGAGGCAATG
CAGCAGCTCAGCAACGATTGGCCCAGATGCTGTTCTGGGGGCAGCAAGGTGTGGCCAAGAATCCCGAAGC
AGCAATTGAGTGGTACGCCAAGGGCGCCCTGGAGACGGAGGATCCTGCGTTAATCTATGACTATGCCATT
GTGCTATTCAAGGGTCAAGGAGTAAAAAAGAACAGACGGCTTGCCTTAGAGCTGATGAAGAAAGCAGCTT
CCAAGGGATTGCATCAGGCAGTCAATGGCCTGGGATGGTATTACCACAAATTCAAGAAAAATTACGCCAA
AGCAGCAAAGTACTGGTTAAAAGCAGAAGAAATGGGGAACCCAGATGCGTCATACAATCTTGGAGTCCTG
CATTTGGATGGCATCTTCCCTGGAGTTCCTGGAAGGAATCAAACTTTAGCTGGTGAATATTTCCATAAGG
CTGCGCAAGGTGGACACATGGAAGGGACCTTGTGGTGTTCTCTCTACTATATCACAGGCAACCTGGAGAC
ATTCCCTAGAGATCCTGAGAAAGCTGTTGTATGGGCAAAACATGTAGCTGAGAAAAATGGCTACTTGGGC
CATGTCATCCGCAAAGGCCTCAATGCCTACCTGGAAGGTTCATGGCATGAAGCTTTGCTGTATTATGTTT
TAGCAGCAGAAACTGGAATTGAAGTGTCACAGACAAATTTAGCACACATCTGTGAGGAGAGGCCAGACCT
GGCCAGGAGATACTTGGGTGTTAACTGTGTTTGGAGATACTATAATTTCTCTGTTTTTCAAATCGATGCT
CCTTCCTTTGCATATTTGAAGATGGGAGACCTTTACTACTATGGCCACCAAAACCAGTCACAAGACCTGG
AGTTGTCTGTGCAGATGTACGCCCAAGCCGCCCTGGATGGAGACTCCCAGGGATTTTTTAACCTGGCCCT
GCTAATCGAGGAAGGTACGATAATCCCACACCATATCTTGGATTTCTTGGAAATTGACTCAACTCTCCAT
TCTAATAACATCTCCATTCTCCAGGAACTGTACGAAAGGTGCTGGAGCCACAGTAACGAGGAGTCCTTCA
GCCCCTGCTCCTTGGCCTGGCTTTACCTGCACTTGCGGCTTCTCTGGGGTGCTATCCTGCACTCAGCCCT
GATCTACTTTCTGGGAACCTTTCTGCTATCCATATTGATCGCCTGGACTGTGCAGTATTTCCAGTCTGTC
TCAGCAAGCGATCCCCCTCCAAGACCATCCCAGGCCTCCCCAGACACTGCCACGTCCACTGCAAGTCCAG
CTGTGACTCCAGCTGCAGATGCCTCTGACCAAGACCAGCCCACAGTAACTAATAACCCGGAGCCACGTGG
GTGA

Translation (1097 aa):
MAPRPKKQPDKNPLHGRELNVVPSLGRQTSLTTSVIPKAEQSVAYKDFIYFTVFEGNVRNVSEVSVEYLC
SQPCVVNLEAVVSSEFRSSIPVYKKRWKNEKHLHTSRTQIVHVKFPSIMVYRDDYFIRHSISVSAVIVRA
WITHKYSGRDWNVKWEENLLHAVAKNYTLLQTIPPFERPFKDHQVCLEWNMGYIWNLRANRIPQCPLEND
VVALLGFPYASSGENTGIVKKFPRFRNRELEATRRQRMDYPVFTVSLWLYLLHYCKANLCGILYFVDSNE
MYGTPSVFLTEEGYLHIQMHLVKGEDLAVKTKFIIPLKEWFRLDISFNGGQIVVTTSIGQDLKSYHNQTI
SFREDFHYNDTAGYFIIGGSRYVAGIEGFFGPLKYYRLRSLHPAQIFNPLLEKQLAEQIKLYYERCAEVQ
EIVSVYASAAKHGGERQEACHLHNSYLDLQRRYGRPSMCRAFPWEKELKDKHPSLFQALLEMDLLTVPRN
QNESVSEIGGKIFEKAVKRLSSIDGLHQISSIVPFLTDSSCCGYHKASYYLAVFYETGLNVPRDQLQGML
YSLVGGQGSERLSSMNLGYKHYQGIDNYPLDWELSYAYYSNIATKTPLDQHTLQGDQAYVETIRLKDDEI
LKVQTKEDGDVFMWLKHEATRGNAAAQQRLAQMLFWGQQGVAKNPEAAIEWYAKGALETEDPALIYDYAI
VLFKGQGVKKNRRLALELMKKAASKGLHQAVNGLGWYYHKFKKNYAKAAKYWLKAEEMGNPDASYNLGVL
HLDGIFPGVPGRNQTLAGEYFHKAAQGGHMEGTLWCSLYYITGNLETFPRDPEKAVVWAKHVAEKNGYLG
HVIRKGLNAYLEGSWHEALLYYVLAAETGIEVSQTNLAHICEERPDLARRYLGVNCVWRYYNFSVFQIDA
PSFAYLKMGDLYYYGHQNQSQDLELSVQMYAQAALDGDSQGFFNLALLIEEGTIIPHHILDFLEIDSTLH
SNNISILQELYERCWSHSNEESFSPCSLAWLYLHLRLLWGAILHSALIYFLGTFLLSILIAWTVQYFQSV
SASDPPPRPSQASPDTATSTASPAVTPAADASDQDQPTVTNNPEPRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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