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Report for CCDS75185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75185.1 Public Homo sapiens 4 SYNPO2 24 110 108 CCDS HistoryNCBI Gene:171024Re-query CCDS DB by CCDS ID:75185.1Re-query CCDS DB by GeneID:171024See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75185.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000610556.4 ENSP00000484885.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610556.4Link to Ensembl Protein Viewer:ENSP00000484885.1Re-query CCDS DB by Nucleotide ID:ENST00000610556Re-query CCDS DB by Protein ID:ENSP00000484885
Original member Current member NCBI NM_001286754.2 NP_001273683.1 Accepted alive Link to Nucleotide Sequence:NM_001286754.2Link to Protein Sequence:NP_001273683.1Re-query CCDS DB by Nucleotide ID:NM_001286754Re-query CCDS DB by Protein ID:NP_001273683Link to BLAST:NP_001273683.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273683.1 1230 Q9UMS6-4 1230 100% 0 0

Chromosomal Locations for CCDS 75185.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118850929 118850940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119023430 119023581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119026627 119027438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119029845 119032027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119057401 119057934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3693 nt):
ATGGTTACACAGATTCGAAATCAGAGCAAAGCCTCTGGGTCTGGGCTCTGTGAGGGAGATGAAGTGGTTT
CCATCAATGGCAACCCTTGTGCAGATCTCACCTACCCTGAAGTCATCAAGCTCATGGAAAGCATAACAGA
CTCTCTCCAAATGCTCATCAAAAGACCATCCAGTGGAATAAGTGAGGCTTTGATATCTGAAAATGAAAAC
AAAAACCTCGAGCATCTCACACATGGGGGTTATGTGGAAAGTACCACCCTGCAGATTCGACCGGCCACAA
AGACCCAGTGCACAGAATTCTTCCTCGCCCCTGTCAAGACTGAAGTTCCCCTAGCTGAGAACCAAAGAAG
TGGTCCCGACTGTGCAGGCAGCTTGAAAGAAGAAACAGGCCCGAGCTACCAAAGGGCTCCCCAAATGCCT
GACTCCCAAAGAGGACGCGTGGCAGAAGAGCTGATCTTAAGGGAGAAGGTAGAAGCGGTACAGCCTGGGC
CTGTGGTTGAGCTGCAACTGTCCCTTTCACAGGAGAGACATAAGGGCGCTAGTGGCCCTTTAGTGGCTCT
CCCGGGAGCTGAAAAATCTAAGTCTCCTGACCCAGACCCTAACTTGTCACATGACAGGATTGTCCACATA
AATTCGATCCCTACTAATGAGAAAGCAGACCCTTTCCTGAGGTCCAGCAAGATAATCCAGATCTCCAGTG
GCAGAGAGTTGAGAGTGATCCAGGAAAGTGAAGCAGGAGATGCGGGACTGCCCCGGGTGGAAGTGATCCT
CGACTGCTCTGACAGGCAGAAGACAGAAGGGTGCAGGCTTCAGGCAGGAAAGGAGTGTGTGGATTCTCCA
GTGGAAGGAGGGCAGTCAGAAGCACCTCCTTCTCTGGTATCCTTTGCCGTCTCATCAGAAGGCACAGAGC
AGGGAGAAGATCCACGCTCGGAAAAAGATCACAGCAGACCTCACAAGCACCGAGCGCGGCATGCACGGCT
CAGGAGGAGTGAAAGCCTGTCAGAAAAACAAGTGAAGGAAGCAAAATCTAAATGCAAAAGCATTGCCCTT
CTTCTAACGGATGCTCCCAACCCCAACTCCAAGGGGGTGTTGATGTTTAAGAAGCGACGTCGGAGGGCCA
GGAAATACACCCTAGTTAGCTACGGTACTGGCGAGCTTGAGCGAGAGGCGGACGAGGAGGAAGAAGGTGA
CAAGGAGGATACATGTGAAGTAGCATTTCTTGGTGCAAGCGAATCAGAGGTGGATGAAGAGTTATTGTCT
GACGTTGACGACAACACACAAGTTGTGAACTTTGACTGGGATTCTGGACTGGTGGACATTGAAAAGAAAC
TGAACAGAGGGGACAAGATGGAGATGTTACCAGACACCACAGGCAAGGGAGCCCTCATGTTTGCCAAGAG
GAGGGAGAGAATGGATCAGATCACAGCCCAAAAAGAAGAGGACAAGGTAGGTGGAACGCCAAGCAGAGAA
CAAGATGCTGCCCAGACCGATGGCCTGAGAACCACGACTTCTTACCAAAGAAAGGAGGAAGAGTCGGTAA
GAACGCAGAGCTCTGTGAGCAAAAGCTACATCGAGGTGAGTCATGGTCTTGGCCATGTTCCCCAACAGAA
TGGCTTCAGTGGGACATCTGAGACAGCAAACATCCAGAGGATGGTCCCCATGAATAGAACGGCCAAACCC
TTCCCAGGGTCTGTGAATCAGCCAGCTACCCCCTTCTCGCCAACCCGAAACATGACGAGTCCCATTGCTG
ACTTTCCTGCACCTCCACCTTACTCTGCAGTCACTCCTCCCCCTGACGCCTTCTCCAGAGGGGTTTCAAG
TCCGATTGCTGGCCCAGCACAGCCCCCTCCATGGCCCCAGCCTGCCCCGTGGTCCCAGCCAGCCTTTTAC
GATTCGTCTGAGCGAATAGCTTCCCGAGATGAGAGGATCTCAGTGCCAGCAAAAAGAACAGGAATATTGC
AGGAGGCCAAAAGGAGAAGCACGACAAAACCCATGTTTACTTTTAAAGAGCCCAAAGTAAGCCCAAATCC
TGAACTCTTGTCACTCCTTCAAAATTCAGAAGGCAAACGGGGCACTGGAGCTGGAGGTGATTCCGGACCG
GAAGAAGACTACCTCAGCTTGGGGGCAGAGGCTTGTAATTTCATGCAAAGCTCCTCTGCCAAACAAAAGA
CCCCTCCTCCTGTTGCTCCAAAACCTGCAGTCAAGTCCTCATCCTCCCAACCAGTAACTCCAGTTTCCCC
AGTCTGGTCTCCAGGAGTGGCTCCCACCCAACCTCCTGCCTTCCCCACATCCAACCCATCAAAGGGCACC
GTTGTCTCCTCCATCAAAATAGCCCAGCCTTCTTACCCTCCTGCCCGGCCTGCAAGTACTTTGAACGTGG
CTGGTCCCTTCAAAGGACCACAAGCAGCAGTAGCCAGTCAGAATTACACACCCAAACCAACAGTTTCCAC
ACCAACAGTCAATGCTGTTCAGCCTGGTGCAGTGGGACCATCCAATGAGCTTCCAGGAATGAGTGGGAGA
GGAGCTCAGCTCTTTGCTAAAAGGCAGTCGAGAATGGAGAAGTATGTGGTCGATTCAGACACGGTGCAGG
CCCACGCTGCTCGAGCTCAGTCTCCCACTCCATCTCTCCCGGCCAGTTGGAAGTACTCCTCCAATGTCCG
AGCACCTCCTCCTGTGGCCTATAATCCTATCCACTCGCCGTCTTACCCACTGGCTGCTCTCAAGTCTCAG
CCATCAGCTGCACAGCCCTCCAAAATGGGCAAGAAAAAGGGAAAGAAACCCCTCAATGCATTAGATGTCA
TGAAGCACCAACCGTATCAGCTCAATGCATCCTTGTTTACTTTCCAACCTCCAGATGCAAAGGATGGCCT
CCCCCAGAAGTCATCAGTCAAGGTCAATTCAGCCCTGGCCATGAAGCAAGCTCTTCCTCCCCGGCCAGTG
AATGCTGCCTCACCTACGAATGTGCAGGCTTCGTCAGTGTACTCGGTACCAGCCTATACCTCTCCTCCTT
CCTTCTTTGCAGAGGCCTCCTCACCAGTCAGTGCATCCCCAGTGCCTGTGGGCATTCCCACCTCGCCAAA
GCAAGAATCAGCCTCATCATCTTATTTTGTGGCACCAAGGCCAAAGTTCTCAGCCAAGAAAAGTGGTGTC
ACAATTCAGGAGAGTGGGCGCTCCCTTTCTCTTCCTGGAAGATCAGTCCCACCCCCCATTTCTACATCTC
CTTGGGTATACCAGCCTACTTATAGTTACTCTAGTAAACCAACCGATGGACTAGAGAAAGCAAACAAGAG
ACCAACTCCTTGGGAAGCAGCAGCAAAGTCTCCTCTCGGTCTAGTGGATGATGCTTTCCAACCCAGAAAC
ATCCAGGAATCCATTGTGGCAAATGTGGTTTCAGCAGCTCGGAGGAAGGTGCTTCCAGGGCCTCCAGAGG
ATTGGAATGAAAGACTGTCCTATATTCCTCAAACCCAGAAGGCCTATATGGGCTCATGTGGAAGGCAAGA
GTATAATGTCACAGCCAATAATAATATGTCCACCACCTCCCAATATGGTTCACAGTTGCCATATGCATAT
TATAGGCAGGCTTCAAGAAATGATTCTGCAATCATGTCCATGGAAACCAGGTCTGATTACTGTCTTCCAG
TAGCTGATTACAACTACAACCCACACCCAAGGGGATGGAGACGCCAAACATGA

Translation (1230 aa):
MVTQIRNQSKASGSGLCEGDEVVSINGNPCADLTYPEVIKLMESITDSLQMLIKRPSSGISEALISENEN
KNLEHLTHGGYVESTTLQIRPATKTQCTEFFLAPVKTEVPLAENQRSGPDCAGSLKEETGPSYQRAPQMP
DSQRGRVAEELILREKVEAVQPGPVVELQLSLSQERHKGASGPLVALPGAEKSKSPDPDPNLSHDRIVHI
NSIPTNEKADPFLRSSKIIQISSGRELRVIQESEAGDAGLPRVEVILDCSDRQKTEGCRLQAGKECVDSP
VEGGQSEAPPSLVSFAVSSEGTEQGEDPRSEKDHSRPHKHRARHARLRRSESLSEKQVKEAKSKCKSIAL
LLTDAPNPNSKGVLMFKKRRRRARKYTLVSYGTGELEREADEEEEGDKEDTCEVAFLGASESEVDEELLS
DVDDNTQVVNFDWDSGLVDIEKKLNRGDKMEMLPDTTGKGALMFAKRRERMDQITAQKEEDKVGGTPSRE
QDAAQTDGLRTTTSYQRKEEESVRTQSSVSKSYIEVSHGLGHVPQQNGFSGTSETANIQRMVPMNRTAKP
FPGSVNQPATPFSPTRNMTSPIADFPAPPPYSAVTPPPDAFSRGVSSPIAGPAQPPPWPQPAPWSQPAFY
DSSERIASRDERISVPAKRTGILQEAKRRSTTKPMFTFKEPKVSPNPELLSLLQNSEGKRGTGAGGDSGP
EEDYLSLGAEACNFMQSSSAKQKTPPPVAPKPAVKSSSSQPVTPVSPVWSPGVAPTQPPAFPTSNPSKGT
VVSSIKIAQPSYPPARPASTLNVAGPFKGPQAAVASQNYTPKPTVSTPTVNAVQPGAVGPSNELPGMSGR
GAQLFAKRQSRMEKYVVDSDTVQAHAARAQSPTPSLPASWKYSSNVRAPPPVAYNPIHSPSYPLAALKSQ
PSAAQPSKMGKKKGKKPLNALDVMKHQPYQLNASLFTFQPPDAKDGLPQKSSVKVNSALAMKQALPPRPV
NAASPTNVQASSVYSVPAYTSPPSFFAEASSPVSASPVPVGIPTSPKQESASSSYFVAPRPKFSAKKSGV
TIQESGRSLSLPGRSVPPPISTSPWVYQPTYSYSSKPTDGLEKANKRPTPWEAAAKSPLGLVDDAFQPRN
IQESIVANVVSAARRKVLPGPPEDWNERLSYIPQTQKAYMGSCGRQEYNVTANNNMSTTSQYGSQLPYAY
YRQASRNDSAIMSMETRSDYCLPVADYNYNPHPRGWRRQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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