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Report for CCDS75186.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75186.1 Public Homo sapiens 4 SYNPO2 24 110 108 CCDS HistoryNCBI Gene:171024Re-query CCDS DB by CCDS ID:75186.1Re-query CCDS DB by GeneID:171024See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 75186.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448416.6 ENSP00000412623.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448416.6Link to Ensembl Protein Viewer:ENSP00000412623.2Re-query CCDS DB by Nucleotide ID:ENST00000448416Re-query CCDS DB by Protein ID:ENSP00000412623
Original member Current member NCBI NM_001286755.2 NP_001273684.1 Accepted alive Link to Nucleotide Sequence:NM_001286755.2Link to Protein Sequence:NP_001273684.1Re-query CCDS DB by Nucleotide ID:NM_001286755Re-query CCDS DB by Protein ID:NP_001273684Link to BLAST:NP_001273684.1

Chromosomal Locations for CCDS 75186.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118889037 118889141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119023430 119023581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119057401 119057515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGGCACAGGGGATTTTATCTGCATTTCCATGACTGGAGGGGCGCCCTGGGGGTTCAGATTGCAAGGTG
GCAAGGAGCAGAAGCAGCCCTTACAAGTTGCAAAGATTCGAAATCAGAGCAAAGCCTCTGGGTCTGGGCT
CTGTGAGGGAGATGAAGTGGTTTCCATCAATGGCAACCCTTGTGCAGATCTCACCTACCCTGAAGTCATC
AAGCTCATGGAAAGCATAACAGACTCTCTCCAAATGCTCATCAAAAGGAGAGTGGGCGCTCCCTTTCTCT
TCCTGGAAGATCAGTCCCACCCCCCATTTCTACATCTCCTTGGGTATACCAGCCTACTTATAGTTACTCT
AGTAAACCAACCGATGGACTAG

Translation (123 aa):
MGTGDFICISMTGGAPWGFRLQGGKEQKQPLQVAKIRNQSKASGSGLCEGDEVVSINGNPCADLTYPEVI
KLMESITDSLQMLIKRRVGAPFLFLEDQSHPPFLHLLGYTSLLIVTLVNQPMD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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