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Report for CCDS75243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75243.1 Public Homo sapiens 5 SLC38A9 24 110 108 CCDS HistoryNCBI Gene:153129Re-query CCDS DB by CCDS ID:75243.1Re-query CCDS DB by GeneID:153129See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 75243.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000416547.6 ENSP00000397429.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000416547.6Link to Ensembl Protein Viewer:ENSP00000397429.2Re-query CCDS DB by Nucleotide ID:ENST00000416547Re-query CCDS DB by Protein ID:ENSP00000397429
Original member Current member NCBI NM_001282429.1 NP_001269358.1 Accepted alive Link to Nucleotide Sequence:NM_001282429.1Link to Protein Sequence:NP_001269358.1Re-query CCDS DB by Nucleotide ID:NM_001282429Re-query CCDS DB by Protein ID:NP_001269358Link to BLAST:NP_001269358.1

Chromosomal Locations for CCDS 75243.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 55626494 55626659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55627891 55627980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55633754 55633902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55635544 55635657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55645789 55645895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55649207 55649314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55652529 55652723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55656715 55656774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55664693 55664863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55669228 55669321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55669557 55669616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGATTTGGAATACCATGATGGGAACATCTATACTAAGCATTCCTTGGGGCATAAAACAGGCTGGATTTA
CTACTGGAATGTGTGTCATCATACTGATGGGCCTTTTAACACTTTATTGCTGCTACAGAGTAGTGAAATC
ACGGACTATGATGTTTTCGTTGGATACCACTAGCTGGGAATATCCAGATGTCTGCAGACATTATTTCGGC
TCCTTTGGGCAGTGGTCGAGTCTCCTTTTCTCCTTGGTGTCTCTCATTGGAGCAATGATAGTTTATTGGG
TGCTTATGTCAAATTTTCTTTTTAATACTGGAAAGTTTATTTTTAATTTTATTCATCACATTAATGACAC
AGACACTATACTGAGTACCAATAATAGCAACCCTGTGATTTGTCCAAGTGCCGGGAGTGGAGGCCATCCT
GACAACAGCTCTATGATTTTCTATGCCAATGACACAGGAGCCCAACAGTTTGAAAAGTGGTGGGATAAGT
CCAGGACAGTCCCCTTTTATCTTGTAGGGCTCCTCCTCCCACTGCTCAATTTCAAGTCTCCTTCATTTTT
TTCAAAATTTAATATCCTAGGCACAGTGTCTGTCCTTTATTTGATTTTCCTTGTCACCTTTAAGGCTGTT
CGCTTGGGATTTCATTTGGAATTTCATTGGTTTATACCAACAGAATTTTTTGTACCAGAGATAAGATTTC
AGTTTCCACAGCTGACTGGAGTGCTTACCCTTGCTTTTTTTATTCATAATTGTATCATCACACTCTTGAA
GAACAACAAGAAACAAGAAAACAATGTGAGGGACTTGTGCATTGCTTATATGCTGGTGACATTAACTTAT
CTCTATATTGGAGTCCTGGTTTTTGCTTCATTTCCTTCACCACCATTATCCAAAGATTGTATTGAGCAGA
ATTTTTTAGACAACTTCCCTAGCAGTGACACCCTGTCCTTCATTGCAAGGATATTCCTGCTGTTCCAGAT
GATGACTGTATACCCACTCTTAGGCTACCTGGCTCGTGTCCAGCTTTTGGGCCATATCTTCGGTGACATT
TATCCTAGCATTTTCCATGTGCTGATTCTTAATCTAATTATTGTGGGAGCTGGAGTGATCATGGCCTGTT
TCTACCCAAACATAGGAGGGATCATAAGATATTCAGGAGCAGCATGTGGACTGGCCTTTGTATTCATATA
CCCATCTCTCATCTATATAATTTCCCTCCACCAAGAAGAGCGTCTGACATGGCCTAAATTAATCTTCCAC
GTTTTCATCATCATTTTGGGCGTGGCTAACCTGATTGTTCAGTTTTTTATGTGA

Translation (437 aa):
MIWNTMMGTSILSIPWGIKQAGFTTGMCVIILMGLLTLYCCYRVVKSRTMMFSLDTTSWEYPDVCRHYFG
SFGQWSSLLFSLVSLIGAMIVYWVLMSNFLFNTGKFIFNFIHHINDTDTILSTNNSNPVICPSAGSGGHP
DNSSMIFYANDTGAQQFEKWWDKSRTVPFYLVGLLLPLLNFKSPSFFSKFNILGTVSVLYLIFLVTFKAV
RLGFHLEFHWFIPTEFFVPEIRFQFPQLTGVLTLAFFIHNCIITLLKNNKKQENNVRDLCIAYMLVTLTY
LYIGVLVFASFPSPPLSKDCIEQNFLDNFPSSDTLSFIARIFLLFQMMTVYPLLGYLARVQLLGHIFGDI
YPSIFHVLILNLIIVGAGVIMACFYPNIGGIIRYSGAACGLAFVFIYPSLIYIISLHQEERLTWPKLIFH
VFIIILGVANLIVQFFM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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