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Report for CCDS75282.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75282.1 Public Homo sapiens 5 SLCO6A1 24 110 108 CCDS HistoryNCBI Gene:133482Re-query CCDS DB by CCDS ID:75282.1Re-query CCDS DB by GeneID:133482See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75282.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389019.7 ENSP00000373671.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389019.7Link to Ensembl Protein Viewer:ENSP00000373671.3Re-query CCDS DB by Nucleotide ID:ENST00000389019Re-query CCDS DB by Protein ID:ENSP00000373671
Original member Current member NCBI NM_001289004.2 NP_001275933.1 Accepted alive Link to Nucleotide Sequence:NM_001289004.2Link to Protein Sequence:NP_001275933.1Re-query CCDS DB by Nucleotide ID:NM_001289004Re-query CCDS DB by Protein ID:NP_001275933Link to BLAST:NP_001275933.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275933.1 657 Q86UG4-2 657 100% 0 0

Chromosomal Locations for CCDS 75282.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 102373352 102373494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102388688 102388825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102390981 102391045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102399555 102399742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102412990 102413143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102419826 102420021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102438617 102438761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102458382 102458491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102459656 102459777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102475697 102475793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102480177 102480434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 102498487 102498844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGTTCGTAGGCGTCGCCCGGCACTCTGGGAGCCAGGATGAAGTCTCAAGGGGAGTAGAGCCGCTGGAGG
CCGCGCGGGCCCAGCCTGCTAAGGACAGGAGGGCCAAGGGAACCCCGAAGTCCTCGAAGCCCGGGAAAAA
ACACCGGTATCTGAGACTACTTCCAGAGGCCTTGATAAGGTTCGGCGGTTTCCGAAAAAGGAAAAAAGCC
AAGTCCTCAGTTTCCAAGAAGCCGGGAGAAGTGGATGACAGTTTGGAGCAGCCCTGTGGTTTGGGCTGCT
TAGTCAGCACCTGCTGTGAGTGTTGCAATAACATTCGCTGCTTCATGATTTTCTACTGCATCCTGCTCAT
ATGTCAAGGTGTGGTGTTTGGTCTTATAGATGTCAGCATTGGCGATTTTCAGAAGGAATATCAACTGAAA
ACCATTGAGAAGTTGGCATTGGAAAAGAGTTACGATATTTCATCTGGCCTGGTAGCAATATTTATAGCAT
TCTATGGAGACAGAAAAAAAGTAATATGGTTTGTAGCTTCCTCCTTTTTAATAGGACTTGGATCACTTTT
ATGTGCTTTTCCATCCATTAATGAAGAAAATAAACAAAGTAAGGTAGGAATTGAAGGTATTGCAGAATGT
ACATCAATGATTGGATATGCTCTGGGTTATGTGCTAGGAGCACCACTAGTTAAAGTCCCTGAGAATACTA
CTTCTGCAACAAACACTACAGTCAATAATGGTAGTCCAGAATGGCTATGGACTTGGTGGATTAATTTTCT
TTTTGCCGCTGTCGTTGCATGGTGTACATTAATACCATTGTCATGCTTTCCAAACAATATGCCAGGTTCA
ACACGGATAAAAGCTAGGAAACGTAAACAGCTTCATTTTTTTGACAGCAGACTTAAAGATCTGAAACTTG
GAACTAATATCAAGGATTTATGTGCTGCTCTTTGGATTCTGATGAAGAATCCAGTGCTCATATGCCTAGC
TCTGTCAAAAGCTACAGAATATTTAGTTATTATTGGAGCTTCTGAATTTTTGCCTATATATTTAGAAAAT
CAGTTTATATTAACACCCACTGTGGCAACTACACTTGCAGGACTTGTTTTAATTCCAGGAGGTGCACTTG
GCCAGCTTCTGGGAGGTGTCATTGTTTCCACATTAGAAATGTCTTGTAAAGCCCTTATGAGATTTATAAT
GGTTACATCTGTGATATCACTTATACTGCTTGTGTTTATTATTTTTGTACGCTGTAATCCAGTGCAATTT
GCTGGGATCAATGAAGATTATGATGGAACAGGGAAGTTGGGAAACCTCACGGCTCCTTGCAATGAAAAAT
GTAGATGCTCATCTTCAATTTATTCTTCTATATGTGGAAGAGATGATATTGAATATTTTTCTCCCTGCTT
TGCAGGGTGTACATATTCTAAAGCACAAAACCAAAAAAAGATGTACTACAATTGTTCTTGCATTAAAGAA
GGATTAATAACTGCAGATGCAGAAGGTGATTTTATTGATGCCAGACCCGGGAAATGTGATGCAAAGTGCT
ATAAGTTACCTTTGTTCATTGCTTTTATCTTTTCTACACTTATATTTTCTGGTTTTTCTGGTGTACCAAT
CGTCTTGGCCATGACGCGGGTTGTACCTGACAAACTGCGTTCTCTGGCCTTGGGTGTAAGCTATGTGATT
TTGAGAATATTTGGGACTATTCCTGGACCATCAATCTTTAAAATGTCAGGAGAAACTTCTTGTATTTTAC
GGGATGTTAATAAATGTGGACACACAGGACGTTGTTGGATATATAACAAGACAAAAATGGCTTTCTTATT
GGTAGGAATATGTTTTCTTTGCAAACTATGCACTATCATCTTCACTACTATTGCATTTTTCATATACAAA
CGTCGTCTAAATGAGAACACTGACTTCCCAGATGTAACTGTGAAGAATCCAAAAGTTAAGAAAAAAGAAG
AAACTGACTTGTAA

Translation (657 aa):
MFVGVARHSGSQDEVSRGVEPLEAARAQPAKDRRAKGTPKSSKPGKKHRYLRLLPEALIRFGGFRKRKKA
KSSVSKKPGEVDDSLEQPCGLGCLVSTCCECCNNIRCFMIFYCILLICQGVVFGLIDVSIGDFQKEYQLK
TIEKLALEKSYDISSGLVAIFIAFYGDRKKVIWFVASSFLIGLGSLLCAFPSINEENKQSKVGIEGIAEC
TSMIGYALGYVLGAPLVKVPENTTSATNTTVNNGSPEWLWTWWINFLFAAVVAWCTLIPLSCFPNNMPGS
TRIKARKRKQLHFFDSRLKDLKLGTNIKDLCAALWILMKNPVLICLALSKATEYLVIIGASEFLPIYLEN
QFILTPTVATTLAGLVLIPGGALGQLLGGVIVSTLEMSCKALMRFIMVTSVISLILLVFIIFVRCNPVQF
AGINEDYDGTGKLGNLTAPCNEKCRCSSSIYSSICGRDDIEYFSPCFAGCTYSKAQNQKKMYYNCSCIKE
GLITADAEGDFIDARPGKCDAKCYKLPLFIAFIFSTLIFSGFSGVPIVLAMTRVVPDKLRSLALGVSYVI
LRIFGTIPGPSIFKMSGETSCILRDVNKCGHTGRCWIYNKTKMAFLLVGICFLCKLCTIIFTTIAFFIYK
RRLNENTDFPDVTVKNPKVKKKEETDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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