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Report for CCDS75338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75338.1 Public Homo sapiens 5 PCDHGA8 24 110 108 CCDS HistoryNCBI Gene:9708Re-query CCDS DB by CCDS ID:75338.1Re-query CCDS DB by GeneID:9708See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75338.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000610569.1 ENSP00000483161.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610569.1Link to Ensembl Protein Viewer:ENSP00000483161.1Re-query CCDS DB by Nucleotide ID:ENST00000610569Re-query CCDS DB by Protein ID:ENSP00000483161
Original member Current member NCBI NM_014004.3 NP_054723.1 Accepted alive Link to Nucleotide Sequence:NM_014004.3Link to Protein Sequence:NP_054723.1Re-query CCDS DB by Nucleotide ID:NM_014004Re-query CCDS DB by Protein ID:NP_054723Link to BLAST:NP_054723.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054723.1 820 Q9Y5G5-2 820 100% 0 0

Chromosomal Locations for CCDS 75338.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141392814 141395276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGGCCGCTCCACAGAGTCGCCCCAGACGCGGCGAGCTGATCCTGCTGTGCGCGCTGCTGGGAACGCTGT
GGGAAATCGGGAGGGGACAGATTCGCTACTCTGTGCCAGAAGAGACGGACAAAGGCTCCTTCGTGGGTAA
TATCTCCAAGGACCTGGGGCTGGACCCCCGGAAGCTGGCGAAGCACGGAGTCCGTATCGTCTCCAGAGGT
AGGACGCAGCTCTTTGCTCTGAACCCGCGCAGCGGCAGCTTGATCACCGCGGGCAGGATAGATCGGGAGG
AGCTCTGCGCTCAGAGCCCGCGGTGTCTGATAAATATTAACACCCTGGTTGAGGATAAAGGAAAACTCTT
TGGGGTAGAAATAGAAATAATTGATATTAACGATAATAACCCAAAATTCCAGGTCGAAGATCTAGAAGTA
AAAATTAACGAAATCGCGGTTCCTGGAGCACGTTATCCACTCCCAGAAGCTGTTGACCCGGATGTGGGCG
TGAACTCCCTCCAGAGCTACCAGCTCAGCCCCAATCACCACTTCTCCCTGGACGTGCAGACTGGAGACAA
TGGAGCCATAAACCCAGAGCTGGTGCTGGAGCGCGCCCTGGACAGGGAGGAAGAGGCTGCTCACCACCTG
GTCCTCACGGCCTCGGATGGCGGCAAGCCGCCTCGCTCTAGCACAGTGCGCATCCACGTGACAGTGTTGG
ATACAAATGACAATGCCCCGGTTTTTCCTCACCCGATTTACCGAGTGAAAGTCCTTGAGAACATGCCCCC
AGGCACGCGGCTGCTTACTGTAACAGCCAGCGACCCGGATGAGGGAATCAACGGAAAAGTGGCATACAAA
TTCCGGAAAATTAATGAAAAACAAACTCCGTTATTCCAGCTTAATGAAAATACTGGGGAAATATCAATAG
CAAAAAGTCTAGATTATGAAGAATGTTCATTTTATGAAATGGAAATACAAGCCGAAGATGTGGGGGCACT
TCTGGGGAGGACCAAATTGCTCATTTCGGTGGAAGATGTAAATGACAATAGACCAGAAGTGATCATTACG
TCTTTGTTTAGCCCAGTGTTAGAAAATTCTCTTCCCGGGACAGTAATTGCCTTCTTGAGTGTGCATGACC
AAGACTCTGGAAAGAATGGTCAAGTTGTCTGTTACACACGTGATAATTTACCTTTTAAATTAGAAAAGTC
AATAGGTAATTATTATAGATTAGTGACAAGGAAATATTTGGACCGAGAAAATGTCTCTATCTACAATATC
ACAGTGATGGCCTCAGATCTAGGAACACCACCTCTGTCCACTGAAACTCAAATCGCTCTGCACGTGGCAG
ACATTAACGACAACCCTCCTACTTTCCCTCATGCCTCCTACTCAGCGTATATCCTAGAGAACAACCTGAG
AGGAGCCTCCATCTTTTCCTTGACTGCACACGACCCCGACAGCCAGGAGAATGCCCAGGTCACTTACTCT
GTGACCGAGGACACGCTGCAGGGGGCGCCCCTGTCCTCGTATATCTCCATCAACTCTGACACCGGTGTCC
TGTATGCGCTGCAATCTTTCGACTATGAGCAGATCCGAGACCTGCAGCTACTGGTAACAGCCAGCGACAG
CGGGGACCCGCCCCTCAGCAGCAACATGTCACTGAGCCTGTTCGTGCTGGACCAGAATGACAACGCGCCC
GAGATCCTGTACCCCGCCCTCCCCACAGACGGTTCCACTGGCGTGGAGCTGGCGCCCCGCTCCGCAGAGC
GTGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCGGGCCAGAACGCCTGGCTGTCCTACCG
CCTGCTCAAGGCCAGCGAGCCGGGACTCTTCTCGGTGGGTCTGCACACGGGCGAGGTGCGCACGGCGCGA
GCCCTGCTGGACAGAGATGCGCTCAAGCAGAGCCTCGTGGTGGCCGTCCAGGACCATGGCCAGCCCCCTC
TCTCCGCCACTGTCACGCTCACCGTAGCCGTGGCTGACAGCATCCCCGAAGTCCTGACCGAGTTGGGCAG
TCTGAAGCCTTCGGTCGACCCGAACGATTCGAGCCTTACACTCTATCTCGTGGTGGCAGTGGCTGCCATC
TCCTGTGTCTTCCTCGCCTTTGTCGCTGTGCTTCTGGGGCTCAGGCTGAGGCGCTGGCACAAGTCACGCC
TGCTCCAGGATTCCGGTGGCAGATTGGTAGGCGTGCCTGCCTCACATTTTGTGGGTGTTGAGGAGGTACA
GGCTTTCCTGCAGACCTATTCCCAGGAAGTCTCCCTCACCGCCGACTCGCGGAAGAGTCACCTGATCTTT
CCCCAGCCCAACTACGCAGACATGCTCATCAGTCAGGAGGGCTGTGAGAAAAATGATTCTTTGTTAACAT
CCGTAGATTTTCATGAATATAAGAATGAAGCTGATCATGGTCAGGTGAGTTTAGTTCTTTGCTTGCTTTT
AATTTCCAGATGA

Translation (820 aa):
MAAPQSRPRRGELILLCALLGTLWEIGRGQIRYSVPEETDKGSFVGNISKDLGLDPRKLAKHGVRIVSRG
RTQLFALNPRSGSLITAGRIDREELCAQSPRCLININTLVEDKGKLFGVEIEIIDINDNNPKFQVEDLEV
KINEIAVPGARYPLPEAVDPDVGVNSLQSYQLSPNHHFSLDVQTGDNGAINPELVLERALDREEEAAHHL
VLTASDGGKPPRSSTVRIHVTVLDTNDNAPVFPHPIYRVKVLENMPPGTRLLTVTASDPDEGINGKVAYK
FRKINEKQTPLFQLNENTGEISIAKSLDYEECSFYEMEIQAEDVGALLGRTKLLISVEDVNDNRPEVIIT
SLFSPVLENSLPGTVIAFLSVHDQDSGKNGQVVCYTRDNLPFKLEKSIGNYYRLVTRKYLDRENVSIYNI
TVMASDLGTPPLSTETQIALHVADINDNPPTFPHASYSAYILENNLRGASIFSLTAHDPDSQENAQVTYS
VTEDTLQGAPLSSYISINSDTGVLYALQSFDYEQIRDLQLLVTASDSGDPPLSSNMSLSLFVLDQNDNAP
EILYPALPTDGSTGVELAPRSAERGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTAR
ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLTELGSLKPSVDPNDSSLTLYLVVAVAAI
SCVFLAFVAVLLGLRLRRWHKSRLLQDSGGRLVGVPASHFVGVEEVQAFLQTYSQEVSLTADSRKSHLIF
PQPNYADMLISQEGCEKNDSLLTSVDFHEYKNEADHGQVSLVLCLLLISR


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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