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Report for CCDS75457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75457.1 Public Homo sapiens 6 PTCRA 24 110 108 CCDS HistoryNCBI Gene:171558Re-query CCDS DB by CCDS ID:75457.1Re-query CCDS DB by GeneID:171558See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 75457.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616441.2 ENSP00000477815.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616441.2Link to Ensembl Protein Viewer:ENSP00000477815.1Re-query CCDS DB by Nucleotide ID:ENST00000616441Re-query CCDS DB by Protein ID:ENSP00000477815
Original member Current member NCBI NM_001243168.2 NP_001230097.1 Accepted alive Link to Nucleotide Sequence:NM_001243168.2Link to Protein Sequence:NP_001230097.1Re-query CCDS DB by Nucleotide ID:NM_001243168Re-query CCDS DB by Protein ID:NP_001230097Link to BLAST:NP_001230097.1

Chromosomal Locations for CCDS 75457.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42916070 42916127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42923027 42923347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42924229 42924273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42925216 42925682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGCCGGTACATGGCTGCTACTTCTCCTGGCCCTTGGGTGTCCAGCCCTACCCACAGGTGTGGGCGGCA
CACCCTTTCCTTCTCTGGCCCCACCAATCATGCTGCTGGTGGATGGAAAGCAGCAGATGGTGGTGGTCTG
CCTGGTCCTTGATGTTGCACCCCCTGGCCTTGACAGCCCCATCTGGTTCTCAGCCGGCAATGGCAGTGCA
CTGGATGCCTTCACCTATGGCCCTTCCCCAGCAACGGATGGCACCTGGACCAACTTGGCCCATCTCTCCC
TGCCTTCTGAGGAGCTGGCATCCTGGGAGCCTTTGGTCTGCCACACTGGGCCTGGGGCTGAGGGTCACAG
CAGGAGTACACAGCCCATGCATCTGTCAGGAGAGGCTTCTACAGCCAGGACCTGCCCCCAGGAGCCTCTC
AGGGGGGGCTGCGGGCTCCTGCGGGCTCCTGAGCGGTTCCTCCTCGCAGGGACACCGGGTGGGGCGCTGT
GGCTGGGGGTCCTGCGGCTGCTGCTCTTCAAGCTGCTGCTGTTTGACCTGCTCCTGACCTGCAGCTGCCT
GTGCGACCCCGCGGGCCCGCTGCCTTCCCCCGCAACCACCACCCGCCTGCGAGCCCTCGGCTCCCATCGA
CTGCACCCGGCCACGGAGACTGGGGGACGAGAGGCCACCAGCTCACCCAGACCCCAGCCTCGGGACCGCC
GCTGGGGTGACACCCCTCCGGGTCGGAAGCCCGGGAGCCCAGTATGGGGGGAAGGGTCTTACCTCAGCAG
TTACCCCACTTGCCCAGCACAGGCCTGGTGCTCAAGATCTGCCCTCAGGGCTCCTTCCTCCAGTCTTGGA
GCATTTTTTGCAGGTGACCTGCCTCCTCCTCTGCAGGCTGGAGCTGCCTGA

Translation (296 aa):
MAGTWLLLLLALGCPALPTGVGGTPFPSLAPPIMLLVDGKQQMVVVCLVLDVAPPGLDSPIWFSAGNGSA
LDAFTYGPSPATDGTWTNLAHLSLPSEELASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPL
RGGCGLLRAPERFLLAGTPGGALWLGVLRLLLFKLLLFDLLLTCSCLCDPAGPLPSPATTTRLRALGSHR
LHPATETGGREATSSPRPQPRDRRWGDTPPGRKPGSPVWGEGSYLSSYPTCPAQAWCSRSALRAPSSSLG
AFFAGDLPPPLQAGAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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