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Report for CCDS7552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7552.1 Public Homo sapiens 10 STN1 24 110 108 CCDS HistoryNCBI Gene:79991Re-query CCDS DB by CCDS ID:7552.1Re-query CCDS DB by GeneID:79991See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000224950.8 ENSP00000224950.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000224950.8Link to Ensembl Protein Viewer:ENSP00000224950.3Re-query CCDS DB by Nucleotide ID:ENST00000224950Re-query CCDS DB by Protein ID:ENSP00000224950
Original member Current member EBI ENST00000369764.2 ENSP00000358779.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369764.2Link to Ensembl Protein Viewer:ENSP00000358779.1Re-query CCDS DB by Nucleotide ID:ENST00000369764Re-query CCDS DB by Protein ID:ENSP00000358779
Original member Current member EBI ENST00000698241.1 ENSP00000513621.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698241.1Link to Ensembl Protein Viewer:ENSP00000513621.1Re-query CCDS DB by Nucleotide ID:ENST00000698241Re-query CCDS DB by Protein ID:ENSP00000513621
Original member Current member EBI ENST00000698242.1 ENSP00000513622.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698242.1Link to Ensembl Protein Viewer:ENSP00000513622.1Re-query CCDS DB by Nucleotide ID:ENST00000698242Re-query CCDS DB by Protein ID:ENSP00000513622
Original member Current member EBI ENST00000698243.1 ENSP00000513623.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698243.1Link to Ensembl Protein Viewer:ENSP00000513623.1Re-query CCDS DB by Nucleotide ID:ENST00000698243Re-query CCDS DB by Protein ID:ENSP00000513623
Original member Current member EBI ENST00000698297.1 ENSP00000513657.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698297.1Link to Ensembl Protein Viewer:ENSP00000513657.1Re-query CCDS DB by Nucleotide ID:ENST00000698297Re-query CCDS DB by Protein ID:ENSP00000513657
Original member Current member EBI ENST00000698298.1 ENSP00000513658.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698298.1Link to Ensembl Protein Viewer:ENSP00000513658.1Re-query CCDS DB by Nucleotide ID:ENST00000698298Re-query CCDS DB by Protein ID:ENSP00000513658
Original member Current member EBI ENST00000698304.1 ENSP00000513664.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698304.1Link to Ensembl Protein Viewer:ENSP00000513664.1Re-query CCDS DB by Nucleotide ID:ENST00000698304Re-query CCDS DB by Protein ID:ENSP00000513664
Original member Current member NCBI NM_024928.5 NP_079204.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024928.5Link to Protein Sequence:NP_079204.2Re-query CCDS DB by Nucleotide ID:NM_024928Re-query CCDS DB by Protein ID:NP_079204Link to BLAST:NP_079204.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079204.2 368 Q9H668 368 100% 0 0

Chromosomal Locations for CCDS 7552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 103882684 103882841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103889072 103889144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103892130 103892252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103897548 103897719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103898877 103899000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103900062 103900223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103905091 103905156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103910527 103910622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103917462 103917594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGCAGCCTGGATCCAGCCGGTGTGAAGAGGAGACCCCTTCCCTCTTGTGGGGTTTGGATCCTGTGTTTC
TAGCCTTTGCAAAACTCTACATCAGGGATATCCTGGACATGAAGGAGTCCCGCCAGGTGCCAGGTGTATT
TTTGTACAATGGACATCCAATAAAACAGGTAGATGTCTTGGGAACTGTCATTGGAGTGAGAGAAAGAGAT
GCTTTCTACAGTTATGGAGTGGATGACAGCACTGGAGTTATAAACTGCATCTGCTGGAAAAAGTTGAATA
CTGAGTCTGTATCAGCTGCTCCAAGTGCAGCAAGAGAGCTCAGCTTAACCTCACAACTTAAGAAGCTACA
AGAGACCATTGAGCAGAAAACAAAGATAGAGATCGGGGACACGATCCGAGTCAGAGGCAGTATCCGCACA
TACAGAGAAGAGCGAGAGATTCATGCCACCACTTACTATAAAGTGGACGACCCAGTGTGGAACATTCAAA
TTGCAAGGATGCTTGAGCTGCCCACTATCTACAGGAAAGTTTATGACCAGCCTTTTCACAGCTCAGCCCT
AGAGAAAGAAGAGGCACTAAGCAATCCAGGCGCCCTGGACCTCCCCAGTCTCACGAGTTTGCTGAGTGAA
AAAGCCAAAGAATTCCTCATGGAGAACAGAGTGCAGAGCTTTTACCAGCAGGAGCTGGAAATGGTGGAGT
CTTTGCTGTCCCTTGCCAATCAGCCTGTGATTCACAGTGCCTCCTCCGACCAAGTGAATTTTAAGAAGGA
CACCACTTCCAAGGCAATTCATAGTATATTTAAGAATGCTATACAACTGCTGCAGGAAAAAGGACTTGTT
TTCCAGAAAGATGATGGTTTTGATAACCTATACTATGTAACCAGAGAAGACAAAGACCTGCACAGAAAGA
TCCACCGGATCATTCAGCAGGACTGCCAGAAACCAAATCACATGGAGAAGGGCTGTCACTTCCTGCACAT
CTTGGCCTGTGCTCGCCTGAGCATCCGCCCGGGCCTGAGCGAGGCTGTGCTGCAGCAAGTTCTGGAGCTC
CTGGAGGACCAGAGTGACATTGTCAGCACAATGGAGCACTACTACACAGCGTTCTGA

Translation (368 aa):
MQPGSSRCEEETPSLLWGLDPVFLAFAKLYIRDILDMKESRQVPGVFLYNGHPIKQVDVLGTVIGVRERD
AFYSYGVDDSTGVINCICWKKLNTESVSAAPSAARELSLTSQLKKLQETIEQKTKIEIGDTIRVRGSIRT
YREEREIHATTYYKVDDPVWNIQIARMLELPTIYRKVYDQPFHSSALEKEEALSNPGALDLPSLTSLLSE
KAKEFLMENRVQSFYQQELEMVESLLSLANQPVIHSASSDQVNFKKDTTSKAIHSIFKNAIQLLQEKGLV
FQKDDGFDNLYYVTREDKDLHRKIHRIIQQDCQKPNHMEKGCHFLHILACARLSIRPGLSEAVLQQVLEL
LEDQSDIVSTMEHYYTAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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