NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS75940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75940.1 Public Homo sapiens 9 STPG3 24 110 108 CCDS HistoryNCBI Gene:441476Re-query CCDS DB by CCDS ID:75940.1Re-query CCDS DB by GeneID:441476See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611378.4 ENSP00000477998.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611378.4Link to Ensembl Protein Viewer:ENSP00000477998.1Re-query CCDS DB by Nucleotide ID:ENST00000611378Re-query CCDS DB by Protein ID:ENSP00000477998
Original member Current member NCBI NM_001256700.2 NP_001243629.1 Accepted alive Link to Nucleotide Sequence:NM_001256700.2Link to Protein Sequence:NP_001243629.1Re-query CCDS DB by Nucleotide ID:NM_001256700Re-query CCDS DB by Protein ID:NP_001243629Link to BLAST:NP_001243629.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243629.1 331 Q8N7X2-3 331 100% 0 0

Chromosomal Locations for CCDS 75940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 137251287 137251396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137251738 137251895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137252001 137252135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137252437 137252525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137252827 137252965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137253099 137253463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGATGAATTCTGACCAGAAGGCAGTGAAATTCCTGGCAAATTTTTACATCAATGGAGGCAAACACTGGA
CCCATGGTCACCTGAGGCAGACACAACCAGAGCCCACCCAGCCCAAGGCATCTGTGCTGTTGTTGGGCCC
GGAGCCGGGGATGGCCTGGGATGAGACACAGCCCCCAAAGATGAAGGAGATCCCAGTTGGCCTCAGGTTA
CAGACGGGCACCCCCCAGGAGTCCCTGCCCACCTACACCCAGACCCTGAGGGAACTATTGCTGGAGCAAC
GCCCCCTGATCACAGCTGACCTGGAAGTCCCCAGCCCCACCAGGTACCAGGTGCCGAGCCCGTCCGTACG
AGAGTCCTCCCCACACCCCCACTACAGCATCGGCTGCAAGCACCAGGGCCGAGAGGGCGGTGGCCGCAGG
GCATGGCAGACTTTGTGGTTCCAGAGCGAAAGCCCCTTCACGCAGAAAGCTGACTTCGACCAAGAGCAAA
AGGCCTCTTTGCAGGCACCTGGCAAGAGATGCCCTGGCCCCAACACCTACAATATCCTTCCTGGGAGCCG
CCTGCAGAGCCCCCGCTCGCCGGCCTTCTCGATGAGCCGCTCCCCTGCGTTCACCTCCTGGCTCAGCACC
TCCTTCTCTTTCGGCAGCCCGAACCCCTGGCCCAGCCGCCTACCACGTGGAGGACTGCAACTCACGCTTC
CCTTCGGCGCCTGGCGTGGTCATCCAGGGTGTACGCAGACCCAAGCGCCACGACACAGGCCCCTTCTGCA
CGCTCTAGAGCCAGCTGGGCACAACCTGCTTGGCCCGGCCACCGAGTGGAACCATGGCCTCCCCCGGGGC
TTTCCCAGGCCTCCCCTGGGACTTGGGGCCCCAGCCTGGCCTTCTGACCCTCTGGGCACCCCGATGCACC
CTTCTGGCTGGCCAACCCTTCTATGGGCTGTGGACAAGGCTGGCCCAGCCTGGATCCCCCATCTGCCCAT
CTCCCCGCTACACTGA

Translation (331 aa):
MMNSDQKAVKFLANFYINGGKHWTHGHLRQTQPEPTQPKASVLLLGPEPGMAWDETQPPKMKEIPVGLRL
QTGTPQESLPTYTQTLRELLLEQRPLITADLEVPSPTRYQVPSPSVRESSPHPHYSIGCKHQGREGGGRR
AWQTLWFQSESPFTQKADFDQEQKASLQAPGKRCPGPNTYNILPGSRLQSPRSPAFSMSRSPAFTSWLST
SFSFGSPNPWPSRLPRGGLQLTLPFGAWRGHPGCTQTQAPRHRPLLHALEPAGHNLLGPATEWNHGLPRG
FPRPPLGLGAPAWPSDPLGTPMHPSGWPTLLWAVDKAGPAWIPHLPISPLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH