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Report for CCDS76171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76171.1 Public Homo sapiens 1 SGIP1 24 110 108 CCDS HistoryNCBI Gene:84251Re-query CCDS DB by CCDS ID:76171.1Re-query CCDS DB by GeneID:84251See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76171.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371039.5 ENSP00000360078.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371039.5Link to Ensembl Protein Viewer:ENSP00000360078.1Re-query CCDS DB by Nucleotide ID:ENST00000371039Re-query CCDS DB by Protein ID:ENSP00000360078
Original member Current member EBI ENST00000684664.1 ENSP00000508234.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684664.1Link to Ensembl Protein Viewer:ENSP00000508234.1Re-query CCDS DB by Nucleotide ID:ENST00000684664Re-query CCDS DB by Protein ID:ENSP00000508234
Original member Current member NCBI NM_001308203.2 NP_001295132.1 Accepted alive Link to Nucleotide Sequence:NM_001308203.2Link to Protein Sequence:NP_001295132.1Re-query CCDS DB by Nucleotide ID:NM_001308203Re-query CCDS DB by Protein ID:NP_001295132Link to BLAST:NP_001295132.1
Original member Current member NCBI NM_001376536.1 NP_001363465.1 Accepted alive Link to Nucleotide Sequence:NM_001376536.1Link to Protein Sequence:NP_001363465.1Re-query CCDS DB by Nucleotide ID:NM_001376536Re-query CCDS DB by Protein ID:NP_001363465Link to BLAST:NP_001363465.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295132.1 631 Q9BQI5-5 631 100% 0 0
NP_001363465.1 631 Q9BQI5-5 631 100% 0 0

Chromosomal Locations for CCDS 76171.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 66534359 66534368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66625847 66625910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66633070 66633094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66639777 66639833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66642810 66642864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66643544 66643719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66670995 66671019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66671944 66671995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66673281 66673366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66677004 66677096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66679678 66679752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66689148 66689275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66690190 66690316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66694439 66694504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66719294 66719405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66729264 66729419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66733748 66733880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66739335 66739537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66740658 66740722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66741272 66741436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66743073 66743095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGATGGAAGGATTGAAAAAACGTACAAGGAAGGCCTTTGGAATACGGAAGAAAGAAAAGGACACTGATT
CTACAGGTTCACCAGATAGAGATGGAATTAAGAAAAGCAATGGGGCACCAAATGGATTTTATGCGGAAAT
TGATTGGGAAAGATATAACTCACCTGAGCTGGATGAAGAAGGCTACAGCATCAGACCCGAGGAACCCGGC
TCTACCAAAGGAAAGCACTTTTATTCTTCAAGTGAATCGGAAGAAGAAGAAGAATCACATAAGAAATTTA
ATATCAAGATTAAACCATTGCAATCTAAAGACATTCTTAAGAATGCTGCAACTGTAGATGAATTGAAGGC
ATCAATAGGCAACATCGCACTTTCCCCATCACCAGTGGGTGCAATTAAAAGGAACTTATCCAGTGAAGAA
GTGGCAAGACCCAGGCGTTCCACACCAACTCCAGAACTTATAAGCAAAAAGCCTCCAGATGACACTACGG
CCCTTGCTCCTCTCTTTGGCCCACCACTAGAATCAGCTTTTGATGAACAGAAGACAGAAGTTCTTTTAGA
TCAGCCTGAGATATGGGGTTCAGGCCAACCAATTAATCCAAGCATGGAGTCGCCAAAGTTAACAAGGCCT
TTTCCCACTGGAACACCTCCACCACTGCCTCCAAAAAATGTACCAGCTACCCCACCCCGAACAGGATCCC
CCTTAACAATTGGACCAGGTGCATCATCCCCTGCTCGACCAGCCACTCCTTTGGTTCCTTGCAGAAGTAC
CACTCCACCTCCACCTCCTCCCCGGCCTCCATCCCGGCCAAAGCTACCTCCAGGAAAACCTGGAGTTGGA
GATGTGTCCAGACCTTTTAGCCCTCCCATTCATTCTTCCAGCCCTCCTCCAATAGCACCCTTAGCGCGGG
CTGAAAGCACTTCTTCAATATCGTCAACCAATTCCTTGAGCGCAGCCACCACTCCCACAGTTGTGTCAGA
AGACGATGTTTTTTATGACAAACTGCCCTCGTTTGAAAGGCGCTGTGAAACGCCTGCAGGTTCTTCCAGG
GGACCCAGCCCCCTAACCATGGGAGCTCAGGACACTCTCCCTGTTGCAGCAGCATTTACAGAAACAGTCA
ATGCCTATTTCAAAGGAGCAGACCCAAGCAAATGTATCGTTAAGATTACCGGAGAAATGGTGTTGTCATT
TCCTGCTGGCATCACCAGACACTTTGCCAACAACCCGTCCCCAGCTGCTCTGACTTTTCGGGTGATAAAT
TTCAGCAGGTTAGAACACGTCCTGCCAAACCCCCAACTTCTCTGCTGTGATAATACACAAAATGATGCCA
ATACCAAGGAATTCTGGGTAAACATGCCAAATTTGATGACTCACCTAAAGAAAGTGTCTGAACAAAAACC
CCAGGCTACATATTATAACGTTGACATGCTCAAATATCAGGTGTCTGCCCAGGGCATTCAGTCCACACCT
CTGAACCTGGCAGTGAATTGGCGATGTGAGCCTTCAAGCACTGACCTGCGCATAGATTACAAATATAATA
CAGATGCAATGACGACTGCTGTGGCCCTCAACAATGTGCAGTTCCTGGTCCCCATCGACGGAGGAGTCAC
CAAGCTCCAGGCAGTGCTCCCACCAGCAGTCTGGAATGCTGAACAACAGAGAATATTGTGGAAGATTCCT
GATATCTCTCAGAAGTCAGAAAATGGAGGGGTGGGTTCTTTGTTGGCAAGATTTCAGTTATCTGAAGGCC
CAAGCAAACCTTCTCCATTGGTTGTGCAGTTCACAAGTGAAGGAAGCACCCTTTCTGGCTGTGACATTGA
ACTTGTTGGAGCAGGGTATCGATTTTCACTCATCAAGAAAAGGTTTGCTGCAGGAAAATACTTGGCAGAT
AACTAA

Translation (631 aa):
MMEGLKKRTRKAFGIRKKEKDTDSTGSPDRDGIKKSNGAPNGFYAEIDWERYNSPELDEEGYSIRPEEPG
STKGKHFYSSSESEEEEESHKKFNIKIKPLQSKDILKNAATVDELKASIGNIALSPSPVGAIKRNLSSEE
VARPRRSTPTPELISKKPPDDTTALAPLFGPPLESAFDEQKTEVLLDQPEIWGSGQPINPSMESPKLTRP
FPTGTPPPLPPKNVPATPPRTGSPLTIGPGASSPARPATPLVPCRSTTPPPPPPRPPSRPKLPPGKPGVG
DVSRPFSPPIHSSSPPPIAPLARAESTSSISSTNSLSAATTPTVVSEDDVFYDKLPSFERRCETPAGSSR
GPSPLTMGAQDTLPVAAAFTETVNAYFKGADPSKCIVKITGEMVLSFPAGITRHFANNPSPAALTFRVIN
FSRLEHVLPNPQLLCCDNTQNDANTKEFWVNMPNLMTHLKKVSEQKPQATYYNVDMLKYQVSAQGIQSTP
LNLAVNWRCEPSSTDLRIDYKYNTDAMTTAVALNNVQFLVPIDGGVTKLQAVLPPAVWNAEQQRILWKIP
DISQKSENGGVGSLLARFQLSEGPSKPSPLVVQFTSEGSTLSGCDIELVGAGYRFSLIKKRFAAGKYLAD
N


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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