NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS76271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76271.1 Public Homo sapiens 1 RNF187 24 110 108 CCDS HistoryNCBI Gene:149603Re-query CCDS DB by CCDS ID:76271.1Re-query CCDS DB by GeneID:149603See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 76271.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305943.9 ENSP00000306396.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305943.9Link to Ensembl Protein Viewer:ENSP00000306396.9Re-query CCDS DB by Nucleotide ID:ENST00000305943Re-query CCDS DB by Protein ID:ENSP00000306396
Original member Current member NCBI NM_001010858.3 NP_001010858.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010858.3Link to Protein Sequence:NP_001010858.2Re-query CCDS DB by Nucleotide ID:NM_001010858Re-query CCDS DB by Protein ID:NP_001010858Link to BLAST:NP_001010858.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010858.2 235 Q5TA31 235 100% 0 0

Chromosomal Locations for CCDS 76271.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 228487489 228487878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228488960 228489052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228493053 228493274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 228493883 228493885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (708 nt):
CTGGCGCTCCCTGCGGGCCCCGCCGAGGCCGCCTGCGCCCTGTGCCAGCGCGCGCCCCGGGAACCGGTGC
GCGCCGACTGCGGCCACCGCTTCTGTCGGGCGTGCGTGGTGCGCTTCTGGGCCGAGGAGGACGGGCCCTT
CCCGTGCCCCGAGTGCGCCGACGACTGCTGGCAGCGCGCCGTGGAGCCCGGCAGGCCCCCGCTCAGCCGC
CGCCTTCTGGCGCTCGAGGAGGCGGCCGCGGCGCCCGCGCGCGACGGCCCGGCCAGCGAGGCCGCGCTGC
AGCTGCTGTGCCGCGCCGACGCCGGCCCGCTCTGCGCCGCCTGCCGTATGGCTGCGGGCCCCGAGCCGCC
CGAGTGGGAACCGCGCTGGAGGAAGGCGCTGCGCGGCAAGGAGAACAAGGGGTCTGTGGAAATCATGAGA
AAGGACTTGAATGACGCCCGGGACCTGCATGGCCAGGCAGAGTCAGCAGCTGCAGTGTGGAAGGGACACG
TGATGGACCGTAGGAAGAAGGCACTGACCGACTACAAGAAGCTGCGGGCCTTCTTTGTGGAGGAGGAGGA
GCATTTCCTGCAGGAGGCTGAGAAGGAGGAGGGGCTCCCTGAGGACGAGCTGGCTGACCCCACTGAGCGG
TTCAGGTCACTGCTGCAGGCGGTCTCGGAGCTGGAGAAGAAGCATCGCAACCTGGGCCTCAGCATGCTGC
TGCAGTGA

Translation (235 aa):
MALPAGPAEAACALCQRAPREPVRADCGHRFCRACVVRFWAEEDGPFPCPECADDCWQRAVEPGRPPLSR
RLLALEEAAAAPARDGPASEAALQLLCRADAGPLCAACRMAAGPEPPEWEPRWRKALRGKENKGSVEIMR
KDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKEEGLPEDELADPTER
FRSLLQAVSELEKKHRNLGLSMLLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH