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Report for CCDS76810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76810.1 Public Homo sapiens 16 HCFC1R1 24 110 108 CCDS HistoryNCBI Gene:54985Re-query CCDS DB by CCDS ID:76810.1Re-query CCDS DB by GeneID:54985See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76810.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000572355.5 ENSP00000458971.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572355.5Link to Ensembl Protein Viewer:ENSP00000458971.1Re-query CCDS DB by Nucleotide ID:ENST00000572355Re-query CCDS DB by Protein ID:ENSP00000458971
Original member Current member NCBI NM_001308070.1 NP_001294999.1 Accepted alive Link to Nucleotide Sequence:NM_001308070.1Link to Protein Sequence:NP_001294999.1Re-query CCDS DB by Nucleotide ID:NM_001308070Re-query CCDS DB by Protein ID:NP_001294999Link to BLAST:NP_001294999.1

Chromosomal Locations for CCDS 76810.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3022863 3022998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3023233 3023361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3023474 3023505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGAGCACCAAGCGGCGCCTGGAGGAGGAGCAGGAGCCTCTGCGCAAGCAGTTTCTGTCTGAGGAGAACA
TGGCCACCCACTTCTCTCAACTCAGCCTGCACAATGACCACCCCTACTGCAGCCCCCCCATGACCTTCTC
CCCAGCCCTGCCCCCACTCAGGAGCCCTTGCTCTGAGCTGCTTCTCTGGCGCTATCCTGGCAGCCTCATC
CCTGAGGCCCTCCGTCTGCTGAGGCTGGGGGACACCCCCAGTCCCCCCTACCCTGCAACCCCAGCTGGGG
ACATAATGGAGCTCTGA

Translation (98 aa):
MSTKRRLEEEQEPLRKQFLSEENMATHFSQLSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLI
PEALRLLRLGDTPSPPYPATPAGDIMEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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