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Report for CCDS76837.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
76837.1 |
Public |
Homo sapiens |
16 |
TMC5 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:79838](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:76837.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:79838](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 76837.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000541464.5 |
ENSP00000441227.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000541464.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000441227.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000541464](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000441227](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001308161.1 |
NP_001295090.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001308161.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001295090.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001308161](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001295090](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001295090.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 76837.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2865 nt): ATGTCTGCCTACTACAGGAATAACTGGTCTGAGGAAGACCCAGATTACCCTGACTATTCAGGGTCTCAGA ACCGTACGCAGGGGTATTTGAAAACTCAAGGTTATCCAGATGTTCCAGGTCCTCTGAACAATCCAGACTA CCCCGGCACCAGGAGCAATCCATACTCTGTAGCCTCCAGAACACGTCCAGACTATCCTGGGTCTCTGGCA GAACCAAATTATCCTAGATCTCTGAGTAATCCAGACTATTCTGGCACCAGAAGCAATGCATACTCTGCAG CCTCTAGAACAAGCCCAGACCATCCTACCTCTCTACCAGAGCCAGATTATAGTGAATTTCAGAGTCATCC CTACCACCGAGCATCATCCAGACAACCAGACTACCCTGGATCTCAACGAAATCCTGATTTTGCAGGCTCC AGCAGCAGTGGAAACTATGCAGGCTCCAGAACACATCCAGATCATTTTGGCTCCTTAGAACCGGACTACC CTGGAGCTCAGAGCAACTCTGATCATCCTGGACCCAGAGCCAATTTGAACCATCCAGGATCCAGAAAGAA TCTGGAACATACAAGTTTTAGAATCAATCCATACGCAGACTCTCTGGGAAAGCCTGATTATCCAGGCGCT GACATTCAACCTAACTCTCCACCCTTTTTTGGGGAGCCAGACTATCCCAGTGCTGAGGACAATCAGAACT TGCCAAGCACTTGGAGAGAACCTGATTATTCAGATGCTGAGAATGGTCATGATTATGGCTCTTCTGAGAC CCCAAAGATGACCAGGGGGGTGCTCAGCAGAACATCTTCAATCCAGCCCTCATTTCGTCACAGGAGTGAT GACCCCGTGGGCAGTCTTTGGGGAGAGAATGATTACCCTGAAGGCATTGAAATGGCATCCATGGAGATGG CAAACTCATATGGCCACTCTCTGCCAGGTGCTCCTGGAAGTGGCTATGTGAACCCTGCTTATGTAGGTGA AAGTGGTCCTGTCCATGCTTATGGAAACCCACCATTGTCTGAATGTGATTGGCACAAGTCACCCCAAGGA CAGAAGTTAATCGCATCCCTTATACCCATGACATCCAGAGACAGAATTAAAGCCATCAGGAACCAGCCAA GGACCATGGAAGAGAAAAGGAACCTTAGGAAAATAGTTGACAAAGAAAAAAGCAAACAGACCCATCGTAT CCTTCAGCTCAATTGCTGTATTCAGTGTCTGAACTCCATTTCCCGGGCTTATCGGAGATCCAAGAACAGC CTGTCGGAAATTCTGAATTCCATCAGCCTGTGGCAGAAGACGCTGAAGATCATTGGAGGCAAGTTTGGAA CCAGCGTCCTCTCCTATTTCAACTTTCTGAGATGGCTTTTGAAGTTCAACATTTTCTCATTCATCCTGAA CTTCAGCTTCATCATAATCCCTCAGTTTACCGTGGCCAAAAAGAACACCCTCCAGTTCACTGGGCTGGAG TTTTTCACTGGGGTGGGTTATTTTAGGGACACAGTGATGTACTATGGCTTTTACACCAATTCCACCATCC AGCACGGGAACAGCGGGGCATCCTACAACATGCAGCTGGCCTACATCTTCACAATCGGAGCATGCTTGAC CACCTGCTTCTTCAGTTTGCTGTTCAGCATGGCCAAGTATTTCCGGAACAACTTCATTAATCCCCACATT TACTCCGGAGGGATCACCAAGCTGATCTTTTGCTGGGACTTCACTGTCACTCATGAAAAAGCTGTGAAGC TAAAACAGAAGAATCTTAGCACTGAGATAAGGTTCCTGAAGACACACAGTAACCCTGGGGCGGTGCTGTT ACTGCCTTTCGTTGTGTCCTGCATTAATCTGGCCGTGCCATGCATCTACTCCATGTTCAGGCTTGTGGAG AGGTACGAGATGCCACGGCACGAAGTCTACGTTCTCCTGATCCGAAACATCTTTTTGAAAATATCAATCA TTGGCATTCTTTGTTACTATTGGCTCAACACCGTGGCCCTGTCTGGTGAAGAGTGTTGGGAAACCCTCAT TGGCCAGGACATCTACCGGCTCCTTCTGATGGATTTTGTGTTCTCTTTAGTCAATTCCTTCCTGGGGGAG TTTCTGAGGAGAATCATTGGGATGCAACTGATCACAAGTCTTGGCCTTCAGGAGTTTGACATTGCCAGGA ACGTTCTAGAACTGATCTATGCACAAACTCTGGTGTGGATTGGCATCTTCTTCTGCCCCCTGCTGCCCTT TATCCAAATGATTATGCTTTTCATCATGTTCTACTCCAAAAATATCAGCCTGATGATGAATTTCCAGCCT CCGAGCAAAGCCTGGCGGGCCTCACAGATGATGACTTTCTTCATCTTCTTGCTCTTTTTCCCATCCTTCA CCGGGGTCTTGTGCACCCTGGCCATCACCATCTGGAGATTGAAGCCTTCAGCTGACTGTGGCCCTTTTCG AGGTCTGCCTCTCTTCATTCACTCCATCTACAGCTGGATCGACACCCTAAGTACACGGCCTGGCTACCTG TGGGTTGTTTGGATCTATCGGAACCTCATTGGAAGTGTGCACTTCTTTTTCATCCTCACCCTCATTGTGC TAATCATCACCTATCTTTACTGGCAGATCACAGAGGGAAGGAAGATTATGATAAGGCTGCTCCATGAGCA GATCATTAATGAGGGCAAAGATAAAATGTTCCTGATAGAAAAATTGATCAAGCTGCAGGATATGGAGAAG AAAGCAAACCCCAGCTCACTTGTTCTGGAAAGGAGAGAGGTGGAGCAACAAGGCTTTTTGCATTTGGGGG AACATGATGGCAGTCTTGACTTGCGATCTAGAAGATCAGTTCAAGAAGGTAATCCAAGGGCCTGA
Translation (954 aa): MSAYYRNNWSEEDPDYPDYSGSQNRTQGYLKTQGYPDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLA EPNYPRSLSNPDYSGTRSNAYSAASRTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGS SSSGNYAGSRTHPDHFGSLEPDYPGAQSNSDHPGPRANLNHPGSRKNLEHTSFRINPYADSLGKPDYPGA DIQPNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDYGSSETPKMTRGVLSRTSSIQPSFRHRSD DPVGSLWGENDYPEGIEMASMEMANSYGHSLPGAPGSGYVNPAYVGESGPVHAYGNPPLSECDWHKSPQG QKLIASLIPMTSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQCLNSISRAYRRSKNS LSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIPQFTVAKKNTLQFTGLE FFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHI YSGGITKLIFCWDFTVTHEKAVKLKQKNLSTEIRFLKTHSNPGAVLLLPFVVSCINLAVPCIYSMFRLVE RYEMPRHEVYVLLIRNIFLKISIIGILCYYWLNTVALSGEECWETLIGQDIYRLLLMDFVFSLVNSFLGE FLRRIIGMQLITSLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQP PSKAWRASQMMTFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRGLPLFIHSIYSWIDTLSTRPGYL WVVWIYRNLIGSVHFFFILTLIVLIITYLYWQITEGRKIMIRLLHEQIINEGKDKMFLIEKLIKLQDMEK KANPSSLVLERREVEQQGFLHLGEHDGSLDLRSRRSVQEGNPRA
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