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Report for CCDS77170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77170.1 Public Homo sapiens 18 TAF4B 24 110 108 CCDS HistoryNCBI Gene:6875Re-query CCDS DB by CCDS ID:77170.1Re-query CCDS DB by GeneID:6875See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77170.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000578121.5 ENSP00000462980.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000578121.5Link to Ensembl Protein Viewer:ENSP00000462980.1Re-query CCDS DB by Nucleotide ID:ENST00000578121Re-query CCDS DB by Protein ID:ENSP00000462980
Original member Current member NCBI NM_001293725.2 NP_001280654.1 Accepted alive Link to Nucleotide Sequence:NM_001293725.2Link to Protein Sequence:NP_001280654.1Re-query CCDS DB by Nucleotide ID:NM_001293725Re-query CCDS DB by Protein ID:NP_001280654Link to BLAST:NP_001280654.1

Chromosomal Locations for CCDS 77170.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 26226934 26227276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26265170 26265315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26267516 26267623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26274663 26274824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26274931 26275053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26281971 26282060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26285882 26286499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26292231 26292381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26293426 26293531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26315229 26315398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26321070 26321200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26327015 26327140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26335175 26335231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26357690 26357794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26389845 26390012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2604 nt):
ATGCCCGCCGGCCTCACCGAACCCGCCGGCGCCGCTCCCCCGGCTGCTGTGAGCGCCTCGGGGACCGTGA
CCATGGCCCCGGCCGGGGCGCTGCCGGTGCGGGTGGAGAGCACTCCGGTGGCCCTGGGCGCCGTGACTAA
GGCTCCTGTCAGCGTCTGCGTGGAGCCCACGGCGTCCCAGCCCCTGCGGTCCCCCGTGGGGACCCTGGTG
ACCAAAGTGGCTCCGGTCAGCGCCCCTCCTAAAGTCAGCAGCGGCCCTAGGCTGCCTGCTCCTCAGATAG
TCGCCGTGAAAGCCCCCAACACCACGACAATCCAGTTTCCTGCTAATTTGCAGCTTCCTCCAGGAACCGT
TTTGATTAAAAGTAACAGTGGTCCGTTGATGTTGGTATCTCCTCAGCAAACTGTAACAAGAGCCGAGACC
ACAAGTAACATAACCTCAAGGCCAGCAGTACCAGCGAATCCTCAAACAGTCAAAATCTGTACAGTGCCGA
ACTCTAGCTCACAATTAATCAAGAAAGTGGCAGTGACACCTGTTAAAAAATTGGCACAAATAGGAACTAC
TGTGGTAACCACTGTTCCGAAGCCTTCCTCAGTACAATCTGTGGCTGTGCCAACCAGTGTCGTCACAGTT
ACTCCTGGAAAGCCATTGAATACTGTAACTACCCTGAAGCCTTCAAGTTTGGGAGCATCATCCACTCCTT
CAAATGAGCCCAATCTTAAAGCAGAGAACTCAGCAGCTGTTCAGATTAATCTTTCTCCGACAATGCTAGA
AAATGTGAAGAAATGCAAGAACTTCCTTGCAATGTTAATAAAACTAGCATGTAGTGGATCACAGTCCCCA
GAAATGGGGCAAAATGTGAAGAAGCTGGTGGAACAACTTTTGGATGCAAAAATCGAAGCAGAAGAATTTA
CTAGGAAACTGTATGTTGAACTCAAGTCTTCACCTCAGCCTCACCTGGTTCCTTTTCTTAAGAAAAGCGT
GGTTGCCTTACGACAACTTCTGCCTAACTCCCAGAGCTTCATCCAGCAATGTGTTCAGCAGACTTCTAGT
GACATGGTCATTGCTACCTGTACTACAACAGTAACAACTTCTCCTGTGGTGACAACTACAGTGTCCTCAA
GCCAGTCTGAAAAGTCAATTATTGTTTCTGGAGCAACAGCACCCAGAACTGTGTCAGTGCAAACTTTGAA
CCCACTTGCTGGTCCAGTGGGAGCAAAAGCTGGAGTTGTGACACTTCATTCTGTGGGCCCAACTGCTGCA
ACAGGAGGAACAACAGCTGGAACTGGTTTGCTTCAGACTTCAAAACCACTTGTGACATCTGTGGCAAACA
CAGTGACCACGGTCTCACTGCAACCTGAAAAGCCAGTTGTCTCTGGAACAGCAGTAACACTGTCCCTTCC
AGCAGTAACTTTTGGAGAAACTTCAGGTGCAGCTATTTGTCTTCCATCTGTGAAACCTGTTGTTTCTTCT
GCTGGGACCACATCTGACAAGCCTGTTATTGGGACTCCAGTTCAAATCAAACTTGCCCAGCCGGGCCCTG
TCCTTTCACAACCAGCTGGGATTCCACAGGCAGTTCAAGTCAAGCAACTATTCTCATTGTTTCAGGTAGT
TCAGCAGCCTTCAGGAGGCAATGAAAAACAAGTGACCACAATTTCACATTCCTCAACATTGACCATTCAG
AAATGTGGACAGAAGACGATGCCAGTGAACACCATAATACCTACTAGTCAGTTTCCTCCAGCTTCCATTC
TAAAGCAAATTACTCTGCCTGGAAATAAAATTCTGTCACTTCAAGCATCTCCTACTCAGAAAAATAGAAT
AAAAGAGAATGTAACATCATGCTTCCGAGATGAGGATGACATCAATGATGTGACTTCTATGGCAGGGGTC
AACCTTAATGAAGAAAATGCCTGCATCTTAGCAACAAACTCTGAATTGGTTGGCACACTCATTCAGTCAT
GTAAAGATGAACCATTTCTTTTTATTGGAGCTCTACAAAAGAGAATTTTAGACATTGGTAAAAAGCATGA
CATTACAGAACTTAACTCTGATGCTGTGAACTTGATCTCCCAAGCAACACAGGAACGACTACGAGGCCTT
CTAGAAAAACTGACTGCAATTGCTCAGCATCGAATGACTACTTACAAGGCAAGTGAAAATTACATCCTGT
GTAGTGATACCAGGTCACAGCTCAAATTTCTTGAAAAGCTGGATCAATTGGAGAAGCAGAGAAAGGATTT
GGAAGAAAGAGAAATGTTACTTAAGGCAGCCAAGAGTCGTTCTAATAAAGAAGATCCAGAACAGCTGAGA
TTAAAGCAGAAAGCCAAAGAGTTACAGCAATTGGAACTTGCACAGATACAGCATAGAGACGCTAATCTCA
CAGCTCTTGCAGCTATTGGACCAAGGAAGAAGAGACCACTAGAATCTGGAATTGAGGGCTTAAAAGACAA
CCTTCTTGCTTCTGGGACATCCAGCCTGACAGCCACCAAACAGTTGCATCGTCCAAGAATCACGAGAATC
TGCCTCAGGGACTTGATATTTTGTATGGAACAGGAACGGGAGATGAAGTATTCTCGAGCTCTATACCTGG
CCCTTCTGAAGTGA

Translation (867 aa):
MPAGLTEPAGAAPPAAVSASGTVTMAPAGALPVRVESTPVALGAVTKAPVSVCVEPTASQPLRSPVGTLV
TKVAPVSAPPKVSSGPRLPAPQIVAVKAPNTTTIQFPANLQLPPGTVLIKSNSGPLMLVSPQQTVTRAET
TSNITSRPAVPANPQTVKICTVPNSSSQLIKKVAVTPVKKLAQIGTTVVTTVPKPSSVQSVAVPTSVVTV
TPGKPLNTVTTLKPSSLGASSTPSNEPNLKAENSAAVQINLSPTMLENVKKCKNFLAMLIKLACSGSQSP
EMGQNVKKLVEQLLDAKIEAEEFTRKLYVELKSSPQPHLVPFLKKSVVALRQLLPNSQSFIQQCVQQTSS
DMVIATCTTTVTTSPVVTTTVSSSQSEKSIIVSGATAPRTVSVQTLNPLAGPVGAKAGVVTLHSVGPTAA
TGGTTAGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAICLPSVKPVVSS
AGTTSDKPVIGTPVQIKLAQPGPVLSQPAGIPQAVQVKQLFSLFQVVQQPSGGNEKQVTTISHSSTLTIQ
KCGQKTMPVNTIIPTSQFPPASILKQITLPGNKILSLQASPTQKNRIKENVTSCFRDEDDINDVTSMAGV
NLNEENACILATNSELVGTLIQSCKDEPFLFIGALQKRILDIGKKHDITELNSDAVNLISQATQERLRGL
LEKLTAIAQHRMTTYKASENYILCSDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLR
LKQKAKELQQLELAQIQHRDANLTALAAIGPRKKRPLESGIEGLKDNLLASGTSSLTATKQLHRPRITRI
CLRDLIFCMEQEREMKYSRALYLALLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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