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Report for CCDS77174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77174.1 Public Homo sapiens 18 CCDC178 24 110 108 CCDS HistoryNCBI Gene:374864Re-query CCDS DB by CCDS ID:77174.1Re-query CCDS DB by GeneID:374864See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77174.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406524.6 ENSP00000385867.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406524.6Link to Ensembl Protein Viewer:ENSP00000385867.2Re-query CCDS DB by Nucleotide ID:ENST00000406524Re-query CCDS DB by Protein ID:ENSP00000385867
Original member Current member EBI ENST00000583930.5 ENSP00000463254.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000583930.5Link to Ensembl Protein Viewer:ENSP00000463254.1Re-query CCDS DB by Nucleotide ID:ENST00000583930Re-query CCDS DB by Protein ID:ENSP00000463254
Original member Current member NCBI NM_001308126.3 NP_001295055.1 Accepted alive Link to Nucleotide Sequence:NM_001308126.3Link to Protein Sequence:NP_001295055.1Re-query CCDS DB by Nucleotide ID:NM_001308126Re-query CCDS DB by Protein ID:NP_001295055Link to BLAST:NP_001295055.1
Original member Current member NCBI NM_001371120.1 NP_001358049.1 Accepted alive Link to Nucleotide Sequence:NM_001371120.1Link to Protein Sequence:NP_001358049.1Re-query CCDS DB by Nucleotide ID:NM_001371120Re-query CCDS DB by Protein ID:NP_001358049Link to BLAST:NP_001358049.1
Original member Current member NCBI NM_001371121.1 NP_001358050.1 Accepted alive Link to Nucleotide Sequence:NM_001371121.1Link to Protein Sequence:NP_001358050.1Re-query CCDS DB by Nucleotide ID:NM_001371121Re-query CCDS DB by Protein ID:NP_001358050Link to BLAST:NP_001358050.1

Chromosomal Locations for CCDS 77174.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 32938011 32938091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32974547 32974681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32983281 32983352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33092761 33092910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33211896 33212055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33215550 33215695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33223106 33223219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33224775 33224936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33226793 33226855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33245245 33245428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33266916 33267052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33267202 33267297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33293159 33293312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33323491 33323633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33333174 33333394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33346211 33346411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33348890 33348975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33356324 33356346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33370050 33370189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33389540 33389629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33397149 33397208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33412031 33412088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2676 nt):
ATGACTGAAAACAAGACAGTTTCCTCTTCTTCCACTAGAGATGATCAAACCAATATAGGTTTAACATGTC
AGGAAGTAAAGGCTCTCAGAGAGAAGGCATGGTCAAGGACAAATGAAGGCAATGCCATGTCTCAAAGTTT
GGTTCTATATGGAGCCTCTAAGGAGAACAGTGAAGGTTTTCATGAAAGTAAAATGACAAATACTGAAGGG
GTGAATAAAGGCATTTACTTTAGCTACCCATGTCGACGTCACAGCTGTGCCGTAGTAAATATTCCAGCAC
CTTGTGTCAACAAAATGATTTCACACATCCAAGATGTGGAGTCCAAAATACAGGAGCATTTGAAAAGGTT
TGAAACTTCTTTTGAAGAATGGAGCAGAACTTCTTCCACAAAAGACCTGAAAGAAGATTGGAGTGTAACT
ACACCAGTGAAAGAGGTCAAACCAGGAGAAAAGAGAGATGAAAAGTGTCCAGAGTTAAAGCAGGAAATGG
AAACATTGCTCTCAGAGGCCATTCGTCTCATTAAAAGTCTAGAAACTGACCGGGCAGACGCTGAAGAAGC
TTTAAAACAACAGAGATCAAGAAAGAATATGATTAACATGAAAATTGACTCTTGGTCAGTCTGGAAACTT
CAAGAACTCCCATTGGCTGTGCAGAAAGAACATGAGGCCTATTTGAGTGATGTTATAGAATTACAATGGC
ATCTTGAAGATAAAGCTAATCAACTACAACATTTTGAAAAACAAAAGACAGAGTTAGAAGAAGCAAATGC
AAAGATTCAAGCAGACATAGACTACATGAATGAACATGGCCCTCTACTGGACTCTAAGCAGAATCAGGAA
CTTCAAGATCTGAAGAACCATTATAAAAAAAAAATGGAGGTAATGGACCTACACAGAAAAGTTAATGAAG
AACTTGAAGAAGCTTTAGAAGCCTGTGAAAATGCCAGATTGAAGGCTCAGCAAATTAAAGAAGAGATTGA
TAAGGATATTTACCAGGATGAAAAAACCATAGAGGCCTACAAGAGAGAGATATATCAACTTAACAGTCTA
TTTGATCATTACTCTTCATCAGTGATAAATGTTAATACTAATATTGAGGAGAAGGAAGAGGAAGTGACTG
AAGCAATAAGGGAAACAAAGTCATCAAAAAATGAATTACATTCTCTATCAAAAATGCTGGAAGATTTGAG
AAGAGTTTATGACCAACTAACCTGGAAGCAAAAAAGTCATGAAAATCAGTATCTGGAAGCAGTTAATGAT
TTTTATGCTGCAAAAAAAACATGGGATATTGAGCTTTCTGATGTTGCAAAAGATTTTTCAGCTATTTCTT
TGGCATGTACAAAACTGACGGAAGACAATAAAAAACTTGAGATTGATATTAACAAAATAACAGTAAAAAC
CAATGAAAGCATACGGAAAAAATCAAAATACGAATCTGAAATAAAATATTTGACAATAATGAAGTTAAAG
AATGATAAACATCTCAAGAACATCTATAAGGAGGCTTATCGCATTGGTACTCTTTTCCACCTAACCAAAC
ACAAGACAGATGAAATGGAAGATAAAATAGCAGAAGTGAGAAGAAAGTTCAAGGGTAGAGAAGAATTCCT
GAAAAAACTCACTCAAGGTGAAGTGGCTGCTGGAATGGTGCTTCAGAAAAAACTATATTCCATTTACGAA
GTCCAGGCACTTGAGCGGAAAGAGCTTATAAAAAATAGAGCAATATGTGCCATGTCACTGGCAGAACTAC
AGGAACCTCTGCTTCAACTAGAAGATGAAGCTGAAAGAATCAGAAGTCTCGACAAAGAACATTCTGTTAT
GCTTAATAATATAATTGATCAGAAAGATCTTATTAGAAGAAAGGTGGGAAAAGTAAAGAAAAAATTACGA
AAAAAGGGGAAGAAAACCCTTGATGCATTAATAGAAACTGAGAGTAAACGCTCAGCAATTTTTAAAGACC
TAGAAGCAACTAAAAGTAAGACAATGATTTTTTATGCAAAAATAAATGAATTGAATGAGGAATTAAAAGC
AAAAGAAGAAGAAAAGAAAAGTTTTGATCAGACACTTGAAATATTAAAGAACAAATTTATAACTATGAGA
TTTAAAAGGGAACATGCACAAACTGTGTTTGATCATTATATGCAAGAGAAAAAAGACTGTGAAGAGAGAA
TCTTTGAGGAAGATCAGAGATTTAGAGTGCTCCTTGCTGTAAGACAAAAAACTCTTCAAGATACCCAAAA
AATAATAGCTGATTCACTTGAAGAAAATCTGCGTTTAGCTCAAGAGTATCAACAGCTACAGATTACATTC
TTAAAAGAAAAGGACAATTATTTCAATATATATGATAAACAGCTATCACTTGATACTTCAATTAGAGATA
AGAAACAGGTTGCAGGCTTCTTACCTAAGAAACTTCCAAACTCTCTGCCAATTATATCAGATGAACTCTC
AAATTTTCAGCTCTGTCAGCTGCAGAGAAGGATGCACACACTGTGGCAGGAGCACTTCAAACTGGTGGTC
CTCTTCAGCCAGATGAGGCTGGCCAACTTCCAGACAGACTCTCAGGAGAGTATTCAGAAAATATTAGCTG
TGCAGGAGGAATCTTCAAATTTAATGCAACACATCTTAGGTTTCTTCCAGACTTTGACAGATGGCACATG
CGAAAACGATGGTTAA

Translation (891 aa):
MTENKTVSSSSTRDDQTNIGLTCQEVKALREKAWSRTNEGNAMSQSLVLYGASKENSEGFHESKMTNTEG
VNKGIYFSYPCRRHSCAVVNIPAPCVNKMISHIQDVESKIQEHLKRFETSFEEWSRTSSTKDLKEDWSVT
TPVKEVKPGEKRDEKCPELKQEMETLLSEAIRLIKSLETDRADAEEALKQQRSRKNMINMKIDSWSVWKL
QELPLAVQKEHEAYLSDVIELQWHLEDKANQLQHFEKQKTELEEANAKIQADIDYMNEHGPLLDSKQNQE
LQDLKNHYKKKMEVMDLHRKVNEELEEALEACENARLKAQQIKEEIDKDIYQDEKTIEAYKREIYQLNSL
FDHYSSSVINVNTNIEEKEEEVTEAIRETKSSKNELHSLSKMLEDLRRVYDQLTWKQKSHENQYLEAVND
FYAAKKTWDIELSDVAKDFSAISLACTKLTEDNKKLEIDINKITVKTNESIRKKSKYESEIKYLTIMKLK
NDKHLKNIYKEAYRIGTLFHLTKHKTDEMEDKIAEVRRKFKGREEFLKKLTQGEVAAGMVLQKKLYSIYE
VQALERKELIKNRAICAMSLAELQEPLLQLEDEAERIRSLDKEHSVMLNNIIDQKDLIRRKVGKVKKKLR
KKGKKTLDALIETESKRSAIFKDLEATKSKTMIFYAKINELNEELKAKEEEKKSFDQTLEILKNKFITMR
FKREHAQTVFDHYMQEKKDCEERIFEEDQRFRVLLAVRQKTLQDTQKIIADSLEENLRLAQEYQQLQITF
LKEKDNYFNIYDKQLSLDTSIRDKKQVAGFLPKKLPNSLPIISDELSNFQLCQLQRRMHTLWQEHFKLVV
LFSQMRLANFQTDSQESIQKILAVQEESSNLMQHILGFFQTLTDGTCENDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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