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Report for CCDS77199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77199.1 Public Homo sapiens 18 TSHZ1 24 110 108 CCDS HistoryNCBI Gene:10194Re-query CCDS DB by CCDS ID:77199.1Re-query CCDS DB by GeneID:10194See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77199.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000580243.3 ENSP00000464391.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000580243.3Link to Ensembl Protein Viewer:ENSP00000464391.1Re-query CCDS DB by Nucleotide ID:ENST00000580243Re-query CCDS DB by Protein ID:ENSP00000464391
Original member Current member NCBI NM_001308210.2 NP_001295139.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001308210.2Link to Protein Sequence:NP_001295139.1Re-query CCDS DB by Nucleotide ID:NM_001308210Re-query CCDS DB by Protein ID:NP_001295139Link to BLAST:NP_001295139.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295139.1 1077 Q6ZSZ6-1 1077 100% 0 0

Chromosomal Locations for CCDS 77199.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 75211877 75211916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75285448 75288641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3234 nt):
ATGCCGAGGAGGAAGCAGCAGGCCCCCCGGCGCTCGGCAGCTTATGTTCCTGAGGAAGAATTGAAGGCAG
CAGAAATAGATGAAGAGCACGTGGAGGATGACGGGCTGTCTTTGGACATTCAGGAAAGTGAGTACATGTG
CAATGAAGAGACGGAGATCAAAGAGGCGCAGAGCTACCAGAACTCCCCAGTCAGCTCTGCGACTAACCAG
GACGCCGGCTACGGGTCGCCCTTCAGTGAGAGCAGCGACCAGCTAGCCCATTTCAAAGGCTCTTCCTCTC
GAGAAGAGAAGGAGGATCCGCAGTGTCCCGACAGCGTCTCGTACCCCCAGGACAGCCTGGCACAGATCAA
AGCTGTGTATGCAAACTTGTTCTCCGAGTCCTGCTGGTCCAGCTTAGCTCTGGATTTAAAGAAGTCGGGT
TCCACCACCAGCACCAACGATGCCAGCCAGAAGGAGAGCTCCGCCCCCACCCCCACACCCCCCACCTGCC
CCGTCAGCACCACTGGCCCCACCACGAGCACGCCCAGCACCAGCTGCAGCTCCAGCACCAGCCACAGCAG
TACCACCAGTACCAGCAGCAGCTCCGGGTACGACTGGCACCAGGCTGCACTGGCCAAGACGCTGCAGCAG
ACGTCCTCGTATGGGCTGCTTCCTGAGCCCAGCCTGTTCAGCACCGTGCAGCTCTACCGCCAGAACAACA
AGCTCTACGGCTCCGTCTTCACGGGCGCCAGCAAGTTCCGGTGCAAAGACTGCAGTGCCGCGTACGACAC
GCTGGTGGAACTGACGGTGCACATGAACGAGACAGGCCACTACCGTGACGACAACAGGGACAAGGACTCC
GAGAAGACCAAGAGGTGGTCCAAGCCCAGGAAGCGCTCCCTGATGGAGATGGAGGGGAAGGAGGATGCCC
AGAAGGTGCTGAAGTGCATGTACTGTGGACACTCCTTTGAGTCCTTGCAGGACCTCAGCGTCCACATGAT
CAAAACCAAGCATTACCAGAAAGTGCCTCTGAAGGAGCCAGTGCCAGCCATCACCAAACTGGTCCCCTCC
ACCAAAAAGCGGGCGCTTCAGGACCTGGCGCCCCCCTGCTCCCCTGAGCCAGCAGGAATGGCCGCAGAGG
TGGCCCTGAGTGAGTCAGCCAAGGATCAGAAAGCAGCGAACCCGTACGTCACGCCCAATAACCGCTATGG
CTACCAGAATGGCGCCAGCTACACCTGGCAGTTTGAGGCCCGCAAGGCGCAGATCCTCAAGTGCATGGAG
TGTGGCAGCTCCCACGACACGCTGCAGCAGCTCACCGCCCACATGATGGTCACCGGGCACTTCCTGAAAG
TGACCACCTCGGCTTCTAAGAAGGGCAAGCAGTTGGTGCTGGACCCTGTGGTGGAAGAGAAGATCCAGTC
CATCCCACTACCGCCCACCACCCACACGCGGCTGCCGGCCTCCAGCATCAAAAAGCAGCCCGACTCTCCC
GCGGGGTCCACGACTTCTGAAGAAAAGAAAGAGCCAGAGAAGGAGAAGCCGCCTGTGGCTGGCGACGCGG
AGAAGATCAAGGAGGAGAGTGAGGACAGCTTGGAGAAATTTGAGCCCAGCACCCTGTACCCGTACCTGCG
TGAGGAGGACCTGGACGACAGCCCCAAGGGAGGGCTGGACATTCTCAAGTCCCTGGAGAATACCGTCTCC
ACGGCCATTAGCAAAGCTCAGAATGGTGCGCCCTCATGGGGTGGCTACCCCAGCATCCATGCAGCCTACC
AGCTCCCGGGCACCGTGAAGCCACTGCCGGCGGCCGTGCAGAGCGTGCAGGTGCAGCCGTCCTATGCTGG
CGGCGTGAAGTCGCTGTCTTCCGCCGAGCACAACGCCCTCCTGCACTCCCCAGGGAGCCTCACGCCCCCA
CCGCACAAGAGCAACGTGTCTGCCATGGAGGAGCTGGTGGAGAAGGTCACGGGCAAGGTCAACATCAAGA
AGGAGGAGAGACCCCCTGAGAAGGAGAAGAGCTCCCTGGCCAAGGCTGCGTCCCCCATAGCAAAAGAGAA
TAAAGATTTCCCGAAAACGGAGGAAGTCAGCGGCAAACCACAGAAGAAGGGCCCTGAGGCCGAGACTGGG
AAGGCCAAAAAGGAGGGACCGCTGGACGTTCACACCCCAAATGGCACAGAGCCTCTCAAAGCAAAGGTCA
CCAACGGCTGTAACAACCTGGGGATCATCATGGACCACTCACCGGAGCCTTCCTTCATCAACCCGCTGAG
CGCTTTGCAGTCCATCATGAACACCCACCTGGGCAAGGTGTCCAAGCCCGTGAGTCCCTCGCTGGACCCG
CTGGCGATGCTGTACAAGATCAGCAACAGCATGCTGGACAAGCCGGTGTACCCCGCCACCCCTGTGAAGC
AGGCCGATGCCATCGACCGCTACTATTATGAAAACAGCGACCAGCCCATTGACTTAACCAAGTCCAAGAA
CAAGCCGCTGGTGTCCAGCGTGGCTGATTCGGTGGCATCACCTCTGCGGGAGAGCGCACTCATGGACATC
TCCGACATGGTGAAAAACCTCACAGGCCGCCTGACGCCCAAGTCCTCCACGCCCTCCACAGTTTCAGAGA
AGTCCGATGCTGATGGCAGCAGCTTTGAGGAGGCGTTGGACGAGCTGTCACCGGTCCACAAGAGGAAGGG
CCGGCAGTCCAACTGGAACCCGCAGCACCTTCTCATCCTGCAGGCCCAGTTCGCCTCGAGCTTGCGGGAG
ACCACAGAGGGCAAGTACATCATGTCGGACTTGGGCCCGCAGGAGAGGGTGCACATCTCGAAGTTTACTG
GGCTCTCCATGACCACCATCAGCCACTGGCTGGCCAATGTGAAGTACCAGTTGAGGAGGACAGGGGGAAC
GAAATTCCTAAAGAACCTGGACACAGGGCATCCTGTTTTCTTTTGCAACGATTGTGCCTCTCAGTTCAGA
ACTGCTTCTACATACATAAGTCATTTGGAGACACACTTGGGCTTCAGCCTGAAGGATCTCTCCAAGCTGC
CACTCAATCAGATTCAAGAACAGCAGAATGTTTCGAAAGTCCTCACCAACAAAACTCTGGGCCCACTGGG
GGCCACCGAGGAAGACTTGGGCTCCACATTCCAATGTAAGCTCTGCAACCGGACTTTTGCGAGCAAGCAC
GCAGTCAAACTGCACCTTAGTAAGACCCACGGCAAGTCTCCCGAGGACCACCTGATCTATGTGACTGAGT
TGGAGAAACAGTAG

Translation (1077 aa):
MPRRKQQAPRRSAAYVPEEELKAAEIDEEHVEDDGLSLDIQESEYMCNEETEIKEAQSYQNSPVSSATNQ
DAGYGSPFSESSDQLAHFKGSSSREEKEDPQCPDSVSYPQDSLAQIKAVYANLFSESCWSSLALDLKKSG
STTSTNDASQKESSAPTPTPPTCPVSTTGPTTSTPSTSCSSSTSHSSTTSTSSSSGYDWHQAALAKTLQQ
TSSYGLLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDS
EKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPS
TKKRALQDLAPPCSPEPAGMAAEVALSESAKDQKAANPYVTPNNRYGYQNGASYTWQFEARKAQILKCME
CGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPASSIKKQPDSP
AGSTTSEEKKEPEKEKPPVAGDAEKIKEESEDSLEKFEPSTLYPYLREEDLDDSPKGGLDILKSLENTVS
TAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLPAAVQSVQVQPSYAGGVKSLSSAEHNALLHSPGSLTPP
PHKSNVSAMEELVEKVTGKVNIKKEERPPEKEKSSLAKAASPIAKENKDFPKTEEVSGKPQKKGPEAETG
KAKKEGPLDVHTPNGTEPLKAKVTNGCNNLGIIMDHSPEPSFINPLSALQSIMNTHLGKVSKPVSPSLDP
LAMLYKISNSMLDKPVYPATPVKQADAIDRYYYENSDQPIDLTKSKNKPLVSSVADSVASPLRESALMDI
SDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSLRE
TTEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNLDTGHPVFFCNDCASQFR
TASTYISHLETHLGFSLKDLSKLPLNQIQEQQNVSKVLTNKTLGPLGATEEDLGSTFQCKLCNRTFASKH
AVKLHLSKTHGKSPEDHLIYVTELEKQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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