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Report for CCDS77297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77297.1 Public Homo sapiens 19 ZNF546 24 110 108 CCDS HistoryNCBI Gene:339327Re-query CCDS DB by CCDS ID:77297.1Re-query CCDS DB by GeneID:339327See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77297.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000600094.5 ENSP00000469540.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600094.5Link to Ensembl Protein Viewer:ENSP00000469540.1Re-query CCDS DB by Nucleotide ID:ENST00000600094Re-query CCDS DB by Protein ID:ENSP00000469540
Original member Current member NCBI NM_001297763.2 NP_001284692.1 Accepted alive Link to Nucleotide Sequence:NM_001297763.2Link to Protein Sequence:NP_001284692.1Re-query CCDS DB by Nucleotide ID:NM_001297763Re-query CCDS DB by Protein ID:NP_001284692Link to BLAST:NP_001284692.1

Chromosomal Locations for CCDS 77297.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 39998327 39998332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40006096 40006182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40007274 40007400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40008470 40008565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40013665 40015781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2433 nt):
ATGCAGCCCCGGTTTCTCTGGATTCTGTGCTTCTCCATGGAGGAAACTCAAGGAGAACTGACAAGTTCTT
GTGGTTCTAAAACCATGGCCAATGTATCTTTGGCATTTAGGGATGTGTCCATAGACCTCTCCCAAGAGGA
GTGGGAGTGCCTGGACGCTGTGCAGAGGGACTTGTACAAGGATGTGATGTTGGAGAACTACAGCAACCTG
GTCTCACTGGGATATACCATTCCTAAGCCAGATGTGATTACTTTATTGGAGCAAGAGAAAGAGCCCTGGA
TAGTAATGAGGGAAGGGACAAGGAATTGGTTCACAGATTTGGAATACAAGTATATTACCAAGAATTTGCT
TTCAGAAAAGAATGTTTGCAAAATCTATTTATCTCAATTGCAGACAGGGGAAAAAAGTAAAAACACCATC
CATGAGGACACCATTTTCAGAAATGGTTTGCAGTGTAAACATGAATTTGAGAGACAAGAGAGACATCAGA
TGGGATGCGTTAGTCAAATGCTAATCCAAAAACAAATATCTCATCCTCTACATCCAAAAATTCATGCTAG
AGAGAAATCATATGAATGTAAGGAATGTAGAAAGGCCTTTAGACAACAGTCATACCTTATTCAACATCTG
AGAATTCACACTGGTGAGAGACCCTATAAATGTATGGAATGTGGAAAGGCCTTTTGTCGAGTGGGAGACC
TTAGAGTACATCACACAATCCATGCTGGGGAGAGACCCTATGAATGTAAAGAATGTGGGAAGGCCTTTAG
ACTTCATTATCACCTTACTGAACATCAGAGAATACATTCTGGTGTGAAACCCTACGAGTGTAAGGAATGT
GGGAAAGCCTTTAGTCGTGTTAGAGACCTTAGAGTACATCAGACAATTCATGCTGGAGAGAGACCTTATG
AATGTAAAGAATGTGGGAAGGCCTTTAGACTTCATTATCAACTAACTGAACATCAAAGAATTCATACTGG
TGAGAGGCCTTATGAATGTAAGGTTTGTGGCAAGACCTTTAGGGTACAACGACATATTAGTCAACATCAG
AAAATTCATACTGGTGTCAAACCCTATAAATGTAATGAATGTGGGAAGGCCTTTAGTCATGGCTCATACC
TTGTTCAACATCAGAAAATTCATACTGGTGAAAAACCCTACGAATGTAAAGAATGTGGTAAGTCCTTTAG
TTTTCATGCAGAACTTGCTCGACATCGTAGAATTCATACTGGTGAGAAACCCTATGAATGTAGAGAATGT
GGAAAAGCCTTTCGTCTTCAAACGGAACTTACTCGGCATCATAGAACTCATACTGGTGAGAAACCCTATG
AATGTAAGGAATGTGGGAAGGCCTTTATTTGTGGTTATCAACTTACTTTACATCTGAGAACTCACACCGG
TGAGATTCCCTATGAATGTAAGGAATGTGGAAAAACCTTCAGTAGTCGCTATCATCTCACTCAACACTAC
AGAATTCATACTGGTGAGAAACCCTACATATGTAACGAATGTGGAAAAGCCTTTCGTCTTCAAGGAGAAC
TTACCCGACATCACAGAATTCATACATGTGAGAAACCCTATGAATGTAAGGAATGTGGGAAGGCTTTTAT
TCATAGCAATCAATTTATTTCACACCAGCGAATTCACACCAGTGAGAGCACCTACATATGTAAAGAATGT
GGGAAGATTTTTAGTCGTCGCTATAATCTTACTCAACATTTTAAAATTCATACTGGTGAAAAACCCTACA
TATGTAATGAATGTGGGAAAGCCTTTCGATTTCAAACAGAACTTACTCAGCATCACAGAATTCATACTGG
TGAAAAACCCTATAAATGTACAGAATGTGGGAAGGCCTTTATTCGTAGCACTCATCTCACGCAACATCAC
AGAATTCATACTGGTGAGAAACCCTACGAATGTACGGAATGTGGGAAGACGTTTAGTCGGCACTATCATC
TTACTCAACATCACAGAGGCCATACTGGTGAGAAGCCCTACATATGTAATGAATGTGGGAATGCTTTTAT
TTGCAGTTATCGACTTACATTACATCAAAGAATTCACACTGGTGAGCTTCCATATGAATGTAAGGAATGT
GGAAAGACCTTTAGTCGTCGGTATCATCTTACTCAACATTTTAGACTTCATACTGGTGAGAAACCTTATA
GCTGTAAAGAATGTGGGAATGCCTTTCGTCTTCAAGCAGAACTTACTCGACATCACATAGTTCACACGGG
TGAGAAACCCTATAAATGTAAAGAATGTGGGAAAGCCTTCAGTGTTAATTCAGAACTTACTCGACATCAC
AGAATTCATACTGGTGAAAAACCCTATCAATGTAAAGAATGTGGAAAAGCCTTTATTCGTAGTGATCAAC
TTACTTTACATCAGAGAAATCATATTAGTGAGGAAGTCCTATGCATAATGTAA

Translation (810 aa):
MQPRFLWILCFSMEETQGELTSSCGSKTMANVSLAFRDVSIDLSQEEWECLDAVQRDLYKDVMLENYSNL
VSLGYTIPKPDVITLLEQEKEPWIVMREGTRNWFTDLEYKYITKNLLSEKNVCKIYLSQLQTGEKSKNTI
HEDTIFRNGLQCKHEFERQERHQMGCVSQMLIQKQISHPLHPKIHAREKSYECKECRKAFRQQSYLIQHL
RIHTGERPYKCMECGKAFCRVGDLRVHHTIHAGERPYECKECGKAFRLHYHLTEHQRIHSGVKPYECKEC
GKAFSRVRDLRVHQTIHAGERPYECKECGKAFRLHYQLTEHQRIHTGERPYECKVCGKTFRVQRHISQHQ
KIHTGVKPYKCNECGKAFSHGSYLVQHQKIHTGEKPYECKECGKSFSFHAELARHRRIHTGEKPYECREC
GKAFRLQTELTRHHRTHTGEKPYECKECGKAFICGYQLTLHLRTHTGEIPYECKECGKTFSSRYHLTQHY
RIHTGEKPYICNECGKAFRLQGELTRHHRIHTCEKPYECKECGKAFIHSNQFISHQRIHTSESTYICKEC
GKIFSRRYNLTQHFKIHTGEKPYICNECGKAFRFQTELTQHHRIHTGEKPYKCTECGKAFIRSTHLTQHH
RIHTGEKPYECTECGKTFSRHYHLTQHHRGHTGEKPYICNECGNAFICSYRLTLHQRIHTGELPYECKEC
GKTFSRRYHLTQHFRLHTGEKPYSCKECGNAFRLQAELTRHHIVHTGEKPYKCKECGKAFSVNSELTRHH
RIHTGEKPYQCKECGKAFIRSDQLTLHQRNHISEEVLCIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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