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Report for CCDS78000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78000.1 Public Homo sapiens 5 AGXT2 24 110 108 CCDS HistoryNCBI Gene:64902Re-query CCDS DB by CCDS ID:78000.1Re-query CCDS DB by GeneID:64902See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78000.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000510428.1 ENSP00000422799.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510428.1Link to Ensembl Protein Viewer:ENSP00000422799.1Re-query CCDS DB by Nucleotide ID:ENST00000510428Re-query CCDS DB by Protein ID:ENSP00000422799
Original member Current member EBI ENST00000618015.4 ENSP00000479154.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618015.4Link to Ensembl Protein Viewer:ENSP00000479154.1Re-query CCDS DB by Nucleotide ID:ENST00000618015Re-query CCDS DB by Protein ID:ENSP00000479154
Original member Current member NCBI NM_001306173.2 NP_001293102.1 Accepted alive Link to Nucleotide Sequence:NM_001306173.2Link to Protein Sequence:NP_001293102.1Re-query CCDS DB by Nucleotide ID:NM_001306173Re-query CCDS DB by Protein ID:NP_001293102Link to BLAST:NP_001293102.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293102.1 439 Q9BYV1-2 439 100% 0 0

Chromosomal Locations for CCDS 78000.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34998719 34998826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35003763 35003861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35010000 35010149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35025763 35025855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35026410 35026510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35032732 35032825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35033460 35033553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35035222 35035316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35036942 35037065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35039324 35039508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35040575 35040663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35047805 35047892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGACTCTAATCTGGAGACATTTGCTGAGACCCTTGTGCCTGGTCACTTCCGCTCCCAGGATCCTTGAGA
TGCATCCTTTCCTGAGCCTAGGTACTTCCCGGACATCAGTAACCAAGCTCAGTCTTCATACAAAGCCCAG
AATGCCTCCATGTGACTTCATGCCTGAAAGATACCAGTCCCTTGGCTACAACCGTGTCCTGGAAATCCAC
AAGGAACATCTTTCTCCTGTGGTGACGGCATATTTCCAGAAACCCCTGCTGCTCCACCAGGGGCACATGG
AGTGGCTCTTTGATGCTGAAGGAAGCAGATACCTGGATTTCTTTTCCGGGATTGTTACTGTCAGTGTTGG
CCATTGCCACCCAAAGGTGAATGCAGTGGCACAAAAGCAGCTCGGCCGCCTGTGGCATACAAGCACCGTC
TTCTTCCACCCTCCAATGCATGAATATGCAGAGAAGCTTGCCGCACTTCTTCCTGAGCCTCTTAAGGTCA
TTTTCTTGGTGAACAGTGGCTCAGAAGCCAATGAGCTGGCCATGCTGATGGCCAGGGCGCACTCAAACAA
CATAGACATCATTTCTTTCAGAGGAGCCTACCATGGATGCAGTCCTTACACACTTGGCTTGACAAACGTA
GGGACCTACAAGATGGAACTCCCTGGTGGGACAGGTTGCCAACCAACAATGTGTCCAGATGTTTTTCGTG
GCCCTTGGGGAGGAAGCCACTGTCGAGATTCTCCAGTGCAAACAATCAGGAAGTGCAGCTGTGCACCAGA
CTGCTGCCAAGCTAAAGATCAGTATATTGAGCAATTCAAAGATACGCTGAGCACATCTGTGGCCAAGTCA
ATTGCTGGATTTTTCGCAGAACCTATTCAAGGTGTGAATGGAGTTGTCCAGTACCCAAAGGGGTTTCTAA
AGGAAGCCTTTGAGCTGGTGCGAGCAAGGGGAGGCGTGTGCATTGCAGATGAAGTGATTAAAGAAGAAAA
TCTACAGGAAAACAGTCAAGAAGTTGGGACCTACATGTTACTAAAGTTTGCTAAGCTGCGGGATGAATTT
GAAATTGTTGGAGACGTCCGAGGCAAAGGTCTCATGATAGGCATAGAAATGGTGCAGGATAAGATAAGCT
GTCGGCCTCTTCCCCGTGAAGAAGTAAATCAGATCCATGAGGACTGCAAGCACATGGGACTCCTCGTTGG
CAGAGGCAGCATTTTTTCTCAGACATTTCGCATTGCGCCCTCAATGTGCATCACTAAACCAGAAGTTGAT
TTTGCAGTAGAAGTATTTCGTTCTGCCTTAACCCAACACATGGAAAGAAGAGCTAAGTAA

Translation (439 aa):
MTLIWRHLLRPLCLVTSAPRILEMHPFLSLGTSRTSVTKLSLHTKPRMPPCDFMPERYQSLGYNRVLEIH
KEHLSPVVTAYFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTV
FFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNV
GTYKMELPGGTGCQPTMCPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLSTSVAKS
IAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVIKEENLQENSQEVGTYMLLKFAKLRDEF
EIVGDVRGKGLMIGIEMVQDKISCRPLPREEVNQIHEDCKHMGLLVGRGSIFSQTFRIAPSMCITKPEVD
FAVEVFRSALTQHMERRAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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