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Report for CCDS78044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78044.1 Public Homo sapiens 5 FER 24 110 108 CCDS HistoryNCBI Gene:2241Re-query CCDS DB by CCDS ID:78044.1Re-query CCDS DB by GeneID:2241See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 78044.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618353.1 ENSP00000484767.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618353.1Link to Ensembl Protein Viewer:ENSP00000484767.1Re-query CCDS DB by Nucleotide ID:ENST00000618353Re-query CCDS DB by Protein ID:ENSP00000484767
Original member Current member NCBI NM_001308031.2 NP_001294960.1 Accepted alive Link to Nucleotide Sequence:NM_001308031.2Link to Protein Sequence:NP_001294960.1Re-query CCDS DB by Nucleotide ID:NM_001308031Re-query CCDS DB by Protein ID:NP_001294960Link to BLAST:NP_001294960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001294960.1 453 P16591-3 453 100% 0 0

Chromosomal Locations for CCDS 78044.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108924661 108924789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108946130 108946222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108954729 108954932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108959225 108959347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109037422 109037478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109044680 109044795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109047104 109047198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109100396 109100519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109180747 109180901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109186200 109186322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 109187433 109187575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGAGCAGAAAATGAAATGTCCTCATTGTAAGGATCAGCTGGAGTCTGGTTTCGGCTCCCAATCCTGTA
AAACATGTGCTTTAATGTTCAGCTCTGAGCCTTCCACATCAGAAGTCCACAGAGATCAGGAAAGAAAGGA
GAGGCTATCCAAATTTGAATCTATTCGTCATTCAATTGCTGGAATAATTAGGTCTCCAAAATCTGCACTG
GGCTCTTCAGCACTTTCTGATATGATCTCCATCAGTGAGAAGCCTTTGGCAGAACAGGACTGGTACCATG
GTGCAATTCCCAGAATAGAAGCTCAAGAACTGTTAAAAAAACAAGGAGACTTTTTGGTGCGAGAGAGTCA
TGGGAAACCTGGTGAATATGTCCTTTCTGTATATTCTGATGGACAGAGGAGACATTTTATCATACAATAT
GTTGATAACATGTATCGATTCGAGGGCACTGGGTTTTCAAACATTCCTCAACTTATAGATCATCACTATA
CAACAAAACAGGTCATCACTAAGAAATCAGGTGTAGTTCTGCTGAATCCTATTCCTAAGGACAAGAAATG
GATTCTCAGTCATGAAGATGTCATATTGGGAGAATTACTGGGCAAGGGAAATTTTGGTGAAGTATATAAG
GGCACATTAAAGGATAAAACTTCTGTTGCTGTTAAAACATGTAAAGAAGATCTTCCTCAGGAATTGAAAA
TAAAATTTTTACAAGAAGCCAAAATTCTCAAGCAATATGATCATCCCAATATTGTCAAACTTATAGGAGT
TTGCACACAAAGACAGCCTGTCTACATCATTATGGAACTGGTTTCAGGAGGTGATTTCCTCACCTTTCTG
AGAAGGAAGAAGGATGAACTAAAACTCAAACAGTTAGTGAAATTTTCATTAGACGCTGCTGCTGGTATGT
TGTATCTCGAGAGTAAAAACTGTATACACAGGGACCTTGCTGCAAGAAACTGCCTGGTAGGTGAAAATAA
TGTTCTGAAAATCAGTGACTTTGGAATGTCTCGTCAAGAGGATGGTGGAGTGTATTCATCTTCTGGCTTA
AAGCAGATTCCCATTAAATGGACAGCACCGGAAGCTCTTAATTATGGGAGATACAGTTCAGAGAGTGACG
TGTGGAGCTTTGGCATCCTTCTCTGGGAGACCTTCAGCTTAGGGGTTTGTCCGTACCCTGGAATGACAAA
TCAGCAAGCAAGAGAGCAAGTAGAAAGAGGATACCGGATGTCAGCTCCCCAGCACTGTCCAGAGGATATT
TCCAAAATCATGATGAAGTGTTGGGATTATAAACCTGAAAATCGCCCTAAGTTCAGTGAACTTCAGAAAG
AGCTCACTATCATCAAGAGAAAACTCACATAG

Translation (453 aa):
MEQKMKCPHCKDQLESGFGSQSCKTCALMFSSEPSTSEVHRDQERKERLSKFESIRHSIAGIIRSPKSAL
GSSALSDMISISEKPLAEQDWYHGAIPRIEAQELLKKQGDFLVRESHGKPGEYVLSVYSDGQRRHFIIQY
VDNMYRFEGTGFSNIPQLIDHHYTTKQVITKKSGVVLLNPIPKDKKWILSHEDVILGELLGKGNFGEVYK
GTLKDKTSVAVKTCKEDLPQELKIKFLQEAKILKQYDHPNIVKLIGVCTQRQPVYIIMELVSGGDFLTFL
RRKKDELKLKQLVKFSLDAAAGMLYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDGGVYSSSGL
KQIPIKWTAPEALNYGRYSSESDVWSFGILLWETFSLGVCPYPGMTNQQAREQVERGYRMSAPQHCPEDI
SKIMMKCWDYKPENRPKFSELQKELTIIKRKLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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