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Report for CCDS78155.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78155.1 Public Homo sapiens 6 PHF3 24 110 108 CCDS HistoryNCBI Gene:23469Re-query CCDS DB by CCDS ID:78155.1Re-query CCDS DB by GeneID:23469See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78155.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509330.5 ENSP00000422841.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509330.5Link to Ensembl Protein Viewer:ENSP00000422841.1Re-query CCDS DB by Nucleotide ID:ENST00000509330Re-query CCDS DB by Protein ID:ENSP00000422841
Original member Current member NCBI NM_001290260.2 NP_001277189.1 Accepted alive Link to Nucleotide Sequence:NM_001290260.2Link to Protein Sequence:NP_001277189.1Re-query CCDS DB by Nucleotide ID:NM_001290260Re-query CCDS DB by Protein ID:NP_001277189Link to BLAST:NP_001277189.1

Chromosomal Locations for CCDS 78155.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 63646552 63646795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63680000 63680161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63684129 63685933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2211 nt):
ATGGATATAGTTGATACATTTAATCATTTAATTCCTACTGAACACTTAGATGATGCCCTATTTCTAGGAT
CCAACCTGGAGAATGAAGTCTGTGAGGATTTTAGTGCAAGTCAAAATGTCTTAGAGGACTCGCTGAAGAA
CATGCTCAGCGATAAGGATCCTATGCTAGGATCTGCAAGTAACCAGTTCTGTTTGCCTGTTTTGGATAGC
AATGATCCCAATTTCCAGATGCCTTGTTCAACAGTTGTTGGTCTTGACGATATTATGGATGAAGGAGTTG
TTAAAGAAAGTGGCAATGATACCATTGATGAAGAAGAACTGATTTTACCTAACAGGAACTTAAGGGACAA
GGTAGAAGAAAATTCAGTGAGATCTCCAAGAAAATCACCTCGTTTAATGGCACAAGAACAAGTAAGAAGT
TTGCGACAGAGCACTATTGCCAAGCGTTCAAATGCAGCACCATTAAGTAACACAAAAAAAGCATCTGGGA
AGACTGTATCTACTGCTAAAGCAGGAGTGAAACAACCAGAAAGGAGTCAGGTTAAAGAAGAAGTATGTAT
GTCACTGAAACCTGAGTACCATAAGGAGAATAGAAGGTGCAGCCGAAATAGCGGACAAATTGAAGTGGTA
CCTGAAGTATCAGTGTCTTCAAGTCATTCTTCAGTGTCATCTTGTCTTGAAATGAAGGATGAAGATGGAT
TAGATTCTAAGCATAAGTGTAATAATCCGGGAGAAATAGATGTGCCATCTCATGAATTAAATTGTTCACT
TCTTTCAGAGACTTGTGTTACTATTGGAGAAAAGAAAAATGAAGCTTTGATGGAATGTAAAGCCAAGCCT
GTTGGTAGTCCATTGTTTAAGTTTTCAGATAAAGAAGAACATGAACAAAATGATTCCATTTCAGGTAAAA
CGGGTGAGACTGTTGTTGAAGAAATGATAGCAACAAGAAAAGTTGAACAAGATTCAAAGGAGACAGTAAA
ATTATCCCATGAAGATGACCATATTCTTGAGGACGCTGGATCTTCTGATATTTCTAGTGATGCTGCTTGT
ACAAATCCAAATAAGACAGAAAACAGCCTTGTAGGTTTGCCTAGTTGTGTAGATGAAGTGACTGAATGTA
ATTTGGAATTGAAGGATACCATGGGTATTGCTGATAAAACTGAGAACACCCTTGAAAGAAATAAAATTGA
ACCGTTGGGTTATTGTGAAGATGCGGAGTCTAATAGGCAGTTGGAGAGCACTGAGTTTAATAAATCAAAC
TTAGAGGTGGTTGATACTAGTACTTTTGGACCGGAAAGTAATATCTTGGAAAATGCTATTTGTGATGTGC
CTGACCAAAATTCAAAACAGTTGAATGCTATAGAAAGTACTAAAATAGAGTCCCATGAAACAGCAAACCT
TCAGGATGACAGAAACAGCCAGTCAAGTAGCGTTTCTTACTTAGAGTCAAAAAGTGTAAAATCCAAACAT
ACAAAACCTGTAATTCATTCTAAGCAAAACATGACCACAGATGCTCCGAAGAAAATTGTTGCAGCAAAGT
ATGAAGTAATACATAGCAAAACTAAAGTTAATGTCAAAAGTGTGAAACGAAATACTGATGTACCAGAATC
TCAGCAAAATTTTCATAGGCCAGTCAAAGTCAGAAAAAAACAAATTGATAAGGAGCCAAAGATTCAGAGT
TGCAATTCTGGGGTTAAATCTGTGAAAAACCAAGCTCATTCTGTACTGAAAAAAACATTACAGGATCAAA
CTTTAGTACAAATTTTCAAGCCCTTAACTCATTCTTTGAGTGATAAGTCACACGCTCATCCTGGTTGCTT
GAAAGAACCTCATCATCCTGCACAAACTGGACATGTATCACATTCTAGCCAGAAACAGTGTCATAAGCCT
CAGCAACAGGCCCCAGCAATGAAAACCAATAGTCACGTGAAGGAAGAGCTTGAACACCCAGGCGTTGAGC
ATTTTAAGGAAGAGGATAAACTGAAACTGAAAAAACCTGAGAAGAACCTACAACCCCGCCAAAGAAGAAG
CAGCAAAAGTTTTTCTTTAGATGAGCCACCATTGTTCATTCCAGATAACATAGCTACCATAAGAAGAGAA
GGCTCTGATCATAGCTCCTCATTTGAAAGCAAATATATGTGGACTCCCAGCAAGCAGTGTGGGTTTTGCA
AAAAACCACATGGCAACAGGTGTGTGTGTATGTGTGTATGA

Translation (736 aa):
MDIVDTFNHLIPTEHLDDALFLGSNLENEVCEDFSASQNVLEDSLKNMLSDKDPMLGSASNQFCLPVLDS
NDPNFQMPCSTVVGLDDIMDEGVVKESGNDTIDEEELILPNRNLRDKVEENSVRSPRKSPRLMAQEQVRS
LRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQPERSQVKEEVCMSLKPEYHKENRRCSRNSGQIEVV
PEVSVSSSHSSVSSCLEMKDEDGLDSKHKCNNPGEIDVPSHELNCSLLSETCVTIGEKKNEALMECKAKP
VGSPLFKFSDKEEHEQNDSISGKTGETVVEEMIATRKVEQDSKETVKLSHEDDHILEDAGSSDISSDAAC
TNPNKTENSLVGLPSCVDEVTECNLELKDTMGIADKTENTLERNKIEPLGYCEDAESNRQLESTEFNKSN
LEVVDTSTFGPESNILENAICDVPDQNSKQLNAIESTKIESHETANLQDDRNSQSSSVSYLESKSVKSKH
TKPVIHSKQNMTTDAPKKIVAAKYEVIHSKTKVNVKSVKRNTDVPESQQNFHRPVKVRKKQIDKEPKIQS
CNSGVKSVKNQAHSVLKKTLQDQTLVQIFKPLTHSLSDKSHAHPGCLKEPHHPAQTGHVSHSSQKQCHKP
QQQAPAMKTNSHVKEELEHPGVEHFKEEDKLKLKKPEKNLQPRQRRSSKSFSLDEPPLFIPDNIATIRRE
GSDHSSSFESKYMWTPSKQCGFCKKPHGNRCVCMCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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