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Report for CCDS78323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78323.1 Public Homo sapiens 8 CCDC25 24 110 108 CCDS HistoryNCBI Gene:55246Re-query CCDS DB by CCDS ID:78323.1Re-query CCDS DB by GeneID:55246See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78323.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000522915.5 ENSP00000428000.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522915.5Link to Ensembl Protein Viewer:ENSP00000428000.1Re-query CCDS DB by Nucleotide ID:ENST00000522915Re-query CCDS DB by Protein ID:ENSP00000428000
Original member Current member NCBI NM_001304532.2 NP_001291461.1 Accepted alive Link to Nucleotide Sequence:NM_001304532.2Link to Protein Sequence:NP_001291461.1Re-query CCDS DB by Nucleotide ID:NM_001304532Re-query CCDS DB by Protein ID:NP_001291461Link to BLAST:NP_001291461.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291461.1 140 Q86WR0-2 140 100% 0 0

Chromosomal Locations for CCDS 78323.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27736216 27736245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27740472 27740517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27748077 27748279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27748495 27748598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27752512 27752551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGACTGTGCCCACCTTGTGAAGGCCAATAGCATTCAAGGCTGCAAGATGAACAACGTTAATGTGGTAT
ATACGCCGTGGTCTAACCTGAAGAAAACAGCTGACATGGATGTGGGGCAGATAGGCTTTCACAGGCAGAA
GGATGTAAAAATTGTGACAGTGGAGAAGAAAGTAAATGAGATCCTGAACCGATTAGAAAAGACCAAAGTC
GAGCGGTTCCCAGACCTAGCAGCAGAGAAAGAATGCAGAGATCGTGAAGAGAGGAATGAGAAAAAAGCCC
AAATTCAGGAAATGAAAAAGAGAGAAAAAGAAGAAATGAAGAAGAAGAGGGAAATGGATGAACTTAGGAG
CTATTCATCACTAATGAAAGTTGAAAATATGTCTTCAAATCAGGATGGCAATGATTCAGATGAATTCATG
TAA

Translation (140 aa):
MDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKV
ERFPDLAAEKECRDREERNEKKAQIQEMKKREKEEMKKKREMDELRSYSSLMKVENMSSNQDGNDSDEFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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