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Report for CCDS78324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78324.1 Public Homo sapiens 8 CCDC25 24 110 108 CCDS HistoryNCBI Gene:55246Re-query CCDS DB by CCDS ID:78324.1Re-query CCDS DB by GeneID:55246See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78324.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524084.5 ENSP00000429861.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524084.5Link to Ensembl Protein Viewer:ENSP00000429861.1Re-query CCDS DB by Nucleotide ID:ENST00000524084Re-query CCDS DB by Protein ID:ENSP00000429861
Original member Current member NCBI NM_001304529.2 NP_001291458.1 Accepted alive Link to Nucleotide Sequence:NM_001304529.2Link to Protein Sequence:NP_001291458.1Re-query CCDS DB by Nucleotide ID:NM_001304529Re-query CCDS DB by Protein ID:NP_001291458Link to BLAST:NP_001291458.1

Chromosomal Locations for CCDS 78324.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27740501 27740517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27752512 27752587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27756719 27756770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27762419 27762458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27765204 27765251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27772513 27772540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (261 nt):
ATGGTGTTCTACTTCACCAGCAGCAGCGTTAATTCATCTGCCTACACTATTTACATGGGAAAAGATAAAT
ATGAAAATGAAGATCTGATCAAGCATGGCTGGCCTGAAGATATCTGGTTTCATGTGGACAAACTCTCTTC
GGCTCATGTATACCTTCGATTACATAAGGGAGAGAATATAGAAGACATCCCAAAGGAAGTGCTGATGGAC
TGTGCCCACCTTGTGAAGGCCAATAGCATTCAAGGAGCTATTCATCACTAA

Translation (86 aa):
MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENIEDIPKEVLMD
CAHLVKANSIQGAIHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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