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Report for CCDS7848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7848.1 Public Homo sapiens 11 CSRP3 24 110 108 CCDS HistoryNCBI Gene:8048Re-query CCDS DB by CCDS ID:7848.1Re-query CCDS DB by GeneID:8048See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7848.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265968.9 ENSP00000265968.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265968.9Link to Ensembl Protein Viewer:ENSP00000265968.3Re-query CCDS DB by Nucleotide ID:ENST00000265968Re-query CCDS DB by Protein ID:ENSP00000265968
Original member Current member EBI ENST00000533783.2 ENSP00000431813.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533783.2Link to Ensembl Protein Viewer:ENSP00000431813.1Re-query CCDS DB by Nucleotide ID:ENST00000533783Re-query CCDS DB by Protein ID:ENSP00000431813
Original member Current member EBI ENST00000649235.1 ENSP00000497388.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649235.1Link to Ensembl Protein Viewer:ENSP00000497388.1Re-query CCDS DB by Nucleotide ID:ENST00000649235Re-query CCDS DB by Protein ID:ENSP00000497388
Original member Current member NCBI NM_003476.5 NP_003467.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003476.5Link to Protein Sequence:NP_003467.1Re-query CCDS DB by Nucleotide ID:NM_003476Re-query CCDS DB by Protein ID:NP_003467Link to BLAST:NP_003467.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003467.1 194 P50461-1 194 100% 0 0

Chromosomal Locations for CCDS 7848.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 19182670 19182746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19184952 19185045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19186216 19186348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19188136 19188304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19192337 19192448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGCCAAACTGGGGCGGAGGCGCAAAATGTGGAGCCTGTGAAAAGACCGTCTACCATGCAGAAGAAATCC
AGTGCAATGGAAGGAGTTTCCACAAGACGTGTTTCCACTGCATGGCCTGCAGGAAGGCTCTTGACAGCAC
GACAGTCGCGGCTCATGAGTCGGAGATCTACTGCAAGGTGTGCTATGGGCGCAGATATGGCCCCAAAGGG
ATCGGGTATGGACAAGGCGCTGGCTGTCTCAGCACAGACACGGGCGAGCATCTCGGCCTGCAGTTCCAAC
AGTCCCCAAAGCCGGCACGCTCAGTTACCACCAGCAACCCTTCCAAATTCACTGCGAAGTTTGGAGAGTC
CGAGAAGTGCCCTCGATGTGGCAAGTCAGTCTATGCTGCTGAGAAGGTTATGGGAGGTGGCAAGCCTTGG
CACAAGACCTGTTTCCGCTGTGCCATCTGTGGGAAGAGTCTGGAGTCCACAAATGTCACTGACAAAGATG
GGGAACTTTATTGCAAAGTTTGCTATGCCAAAAATTTTGGCCCCACGGGTATTGGGTTTGGAGGCCTTAC
ACAACAAGTGGAAAAGAAAGAATGA

Translation (194 aa):
MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKG
IGYGQGAGCLSTDTGEHLGLQFQQSPKPARSVTTSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPW
HKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTQQVEKKE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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