NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS78580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78580.1 Public Mus musculus 1 Nabp1 23 108 98 CCDS HistoryNCBI Gene:109019Re-query CCDS DB by CCDS ID:78580.1Re-query CCDS DB by GeneID:109019See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78580.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000188051.6 ENSMUSP00000139853.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188051.6Link to Ensembl Protein Viewer:ENSMUSP00000139853.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188051Re-query CCDS DB by Protein ID:ENSMUSP00000139853
Original member Current member EBI ENSMUST00000189542.6 ENSMUSP00000140059.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189542.6Link to Ensembl Protein Viewer:ENSMUSP00000140059.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189542Re-query CCDS DB by Protein ID:ENSMUSP00000140059
Original member Current member EBI ENSMUST00000186003.6 ENSMUSP00000140126.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186003.6Link to Ensembl Protein Viewer:ENSMUSP00000140126.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186003Re-query CCDS DB by Protein ID:ENSMUSP00000140126
Original member Current member EBI ENSMUST00000186684.6 ENSMUSP00000140179.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186684.6Link to Ensembl Protein Viewer:ENSMUSP00000140179.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186684Re-query CCDS DB by Protein ID:ENSMUSP00000140179
Original member Current member EBI ENSMUST00000188204.6 ENSMUSP00000140469.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188204.6Link to Ensembl Protein Viewer:ENSMUSP00000140469.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188204Re-query CCDS DB by Protein ID:ENSMUSP00000140469
Original member Current member EBI ENSMUST00000185534.1 ENSMUSP00000140557.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185534.1Link to Ensembl Protein Viewer:ENSMUSP00000140557.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185534Re-query CCDS DB by Protein ID:ENSMUSP00000140557
Original member Current member NCBI NM_001310548.1 NP_001297477.1 Accepted alive Link to Nucleotide Sequence:NM_001310548.1Link to Protein Sequence:NP_001297477.1Re-query CCDS DB by Nucleotide ID:NM_001310548Re-query CCDS DB by Protein ID:NP_001297477Link to BLAST:NP_001297477.1
Original member Current member NCBI NM_001310549.1 NP_001297478.1 Accepted alive Link to Nucleotide Sequence:NM_001310549.1Link to Protein Sequence:NP_001297478.1Re-query CCDS DB by Nucleotide ID:NM_001310549Re-query CCDS DB by Protein ID:NP_001297478Link to BLAST:NP_001297478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297477.1 118 Q8BGW5-2 118 100% 0 0
NP_001297478.1 118 Q8BGW5-2 118 100% 0 0

Chromosomal Locations for CCDS 78580.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 51471245 51471411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51472329 51472380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51473006 51473081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 51474534 51474595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGTGGAAAGGATGCCTGACACTTTATACTGGAAGAGGTGGTGAACTTCAAAAAATTGGAGAATTTTGTA
TGGTGTATTCAGAAGTGCCAAATTTCAGTGAGCCAAACCCAGATTATAGAGGACAGCAGAATAGAGGGGT
ACAAAATGAACAGAAGGATAAACTGAGCACCAATACATTTGGACCAGTGGGAAATGGTGATCAGACTGGC
CCTGAATCTAGGGGATATCATCTTCCATATGGCAGAAGCAATGGTCCGGGACCTATCAGTCCACAGCTAC
CAGGAACACCTAGTAGTCAAACAGTCAGGACCACAATAAGTAACGCCAGAGATCCGAGGAGAGCCTTTAA
AAGATGA

Translation (118 aa):
MWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYRGQQNRGVQNEQKDKLSTNTFGPVGNGDQTG
PESRGYHLPYGRSNGPGPISPQLPGTPSSQTVRTTISNARDPRRAFKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH