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Report for CCDS78787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78787.1 Public Mus musculus 10 Oprm1 23 108 98 CCDS HistoryNCBI Gene:18390Re-query CCDS DB by CCDS ID:78787.1Re-query CCDS DB by GeneID:18390See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78787.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056385.13 ENSMUSP00000060590.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056385.13Link to Ensembl Protein Viewer:ENSMUSP00000060590.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056385Re-query CCDS DB by Protein ID:ENSMUSP00000060590
Original member Current member EBI ENSMUST00000092734.10 ENSMUSP00000090410.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092734.10Link to Ensembl Protein Viewer:ENSMUSP00000090410.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000092734Re-query CCDS DB by Protein ID:ENSMUSP00000090410
Original member Current member EBI ENSMUST00000105607.7 ENSMUSP00000101232.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105607.7Link to Ensembl Protein Viewer:ENSMUSP00000101232.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105607Re-query CCDS DB by Protein ID:ENSMUSP00000101232
Original member Current member NCBI NM_001302793.1 NP_001289722.1 Accepted alive Link to Nucleotide Sequence:NM_001302793.1Link to Protein Sequence:NP_001289722.1Re-query CCDS DB by Nucleotide ID:NM_001302793Re-query CCDS DB by Protein ID:NP_001289722Link to BLAST:NP_001289722.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289722.1 398 P42866-1 398 100% 0 0

Chromosomal Locations for CCDS 78787.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 6788875 6789158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6828885 6829237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6829977 6830497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6849806 6849844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGGACAGCAGCGCCGGCCCAGGGAACATCAGCGACTGCTCTGACCCCTTAGCTCCTGCAAGTTGCTCCC
CAGCACCTGGCTCCTGGCTCAACTTGTCCCACGTTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCG
CACGGGGCTTGGCGGGAGCCACAGCCTGTGCCCTCAGACCGGCAGCCCTTCCATGGTCACAGCCATCACC
ATCATGGCCCTCTATTCTATCGTGTGTGTAGTGGGCCTCTTTGGAAACTTCCTGGTCATGTATGTGATTG
TAAGATATACCAAAATGAAGACTGCCACCAACATCTACATTTTCAACCTTGCTCTGGCAGATGCCTTAGC
CACTAGCACGCTGCCCTTTCAGAGTGTTAACTACCTGATGGGAACGTGGCCCTTTGGAAACATCCTCTGC
AAGATCGTGATCTCAATAGACTACTACAACATGTTCACCAGTATCTTCACCCTCTGCACCATGAGTGTAG
ACCGCTACATTGCCGTCTGCCACCCGGTCAAGGCCCTGGATTTCCGTACCCCCCGAAATGCCAAAATTGT
CAATGTCTGCAACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAATGTTCATGGCAACCACAAAATAC
AGGCAGGGGTCCATAGATTGCACCCTCACGTTCTCTCATCCCACATGGTACTGGGAGAACCTGCTCAAAA
TCTGTGTCTTCATCTTCGCCTTCATCATGCCGGTCCTCATCATCACTGTGTGTTATGGACTGATGATCTT
ACGACTCAAGAGTGTCCGCATGCTGTCGGGCTCCAAAGAAAAGGACAGGAACCTGCGCAGGATCACCCGG
ATGGTGCTGGTGGTCGTGGCTGTATTTATTGTCTGCTGGACCCCCATCCACATCTATGTCATCATCAAAG
CACTGATCACGATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCACTTCTGCATTGCCTTGGGTTACAC
AAACAGCTGCCTGAACCCAGTTCTTTATGCGTTCCTGGATGAAAACTTCAAACGATGTTTTAGAGAGTTC
TGCATCCCAACTTCCTCCACAATCGAACAGCAAAACTCTGCTCGAATCCGTCAAAACACTAGGGAACACC
CCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGCTAGAAAATCTGGAAGCAGAAACTGCTCCATT
GCCCTAA

Translation (398 aa):
MDSSAGPGNISDCSDPLAPASCSPAPGSWLNLSHVDGNQSDPCGPNRTGLGGSHSLCPQTGSPSMVTAIT
IMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNILC
KIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKY
RQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRRITR
MVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREF
CIPTSSTIEQQNSARIRQNTREHPSTANTVDRTNHQLENLEAETAPLP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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