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Report for CCDS78953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78953.1 Public Mus musculus 11 Rnf187 23 108 98 CCDS HistoryNCBI Gene:108660Re-query CCDS DB by CCDS ID:78953.1Re-query CCDS DB by GeneID:108660See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 78953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094151.5 ENSMUSP00000091703.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094151.5Link to Ensembl Protein Viewer:ENSMUSP00000091703.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000094151Re-query CCDS DB by Protein ID:ENSMUSP00000091703
Original member Current member EBI ENSMUST00000217262.1 ENSMUSP00000150777.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217262.1Link to Ensembl Protein Viewer:ENSMUSP00000150777.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217262Re-query CCDS DB by Protein ID:ENSMUSP00000150777
Original member Current member NCBI NM_022423.2 NP_071868.2 Accepted alive Link to Nucleotide Sequence:NM_022423.2Link to Protein Sequence:NP_071868.2Re-query CCDS DB by Nucleotide ID:NM_022423Re-query CCDS DB by Protein ID:NP_071868Link to BLAST:NP_071868.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071868.2 236 Q8BFX1 236 100% 0 0

Chromosomal Locations for CCDS 78953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58933394 58933396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58934007 58934231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58937140 58937232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58938395 58938784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (711 nt):
CTGGCGCTCCCCGCGGGCCCAGCTGATGCCATCTGCGCCCTGTGTCAGCGCGCGCCCCGCGAACCGGTGC
GCGCCGACTGCGGCCACCGTTTCTGCCGGGCGTGCGTGGTGCGCTTCTGGGCCGAGGAGGACGGGCCCTT
CCCGTGCCCGGAGTGTGCCGATGACTGCTGGCAGCGCGCCGTAGAGCCCAGCCGCCCTCCGCTCAGCCGC
CGCCTCCTGGCTCTCGAGGAGGCGGCCGCGGCGCCGGCGCGCGATGGCCCTGCCAGCGAGGCCGCGCTGC
AGCTGCTCTGTCGCGCCGACGGGGATCCGCTGTGCTCCGCCTGCCGCATGGCCGCTGGCCCGGAGCCGCC
GGAGTGGGAACCGCGCTGGAGGAAGGCCCTGCGCGGCAAGGAGAACAAGGGCTCTGTGGAAATCATGAGG
AAGGACTTAAATGATGCCCGGGACCTGCATGGTCAGGCAGAATCAGCGGCTGCTGTGTGGAAGGGGCATG
TTATGGACCGAAGGAAGAAGGCCCTGACTGACTATAAGAAGCTTCGGGCCTTCTTCGTGGAGGAGGAGGA
ACACTTTCTGCAAGAGGCTGAGAAGGATGAGGGTGCTTCCGAGGATGATGAGCTGGCCGACCCGGCAGAT
CGCTTCCGGTCCCTGCTGCAGGCTGTGTCAGAGCTGGAGAAGAAGCACCGCAACCTGGGCCTCAGCATGC
TTCTGCAGTGA

Translation (236 aa):
MALPAGPADAICALCQRAPREPVRADCGHRFCRACVVRFWAEEDGPFPCPECADDCWQRAVEPSRPPLSR
RLLALEEAAAAPARDGPASEAALQLLCRADGDPLCSACRMAAGPEPPEWEPRWRKALRGKENKGSVEIMR
KDLNDARDLHGQAESAAAVWKGHVMDRRKKALTDYKKLRAFFVEEEEHFLQEAEKDEGASEDDELADPAD
RFRSLLQAVSELEKKHRNLGLSMLLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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