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Report for CCDS7955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7955.1 Public Homo sapiens 11 PRG2 24 110 108 CCDS HistoryNCBI Gene:5553Re-query CCDS DB by CCDS ID:7955.1Re-query CCDS DB by GeneID:5553See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7955.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311862.10 ENSP00000312134.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311862.10Link to Ensembl Protein Viewer:ENSP00000312134.5Re-query CCDS DB by Nucleotide ID:ENST00000311862Re-query CCDS DB by Protein ID:ENSP00000312134
Original member Current member EBI ENST00000525955.1 ENSP00000433016.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525955.1Link to Ensembl Protein Viewer:ENSP00000433016.1Re-query CCDS DB by Nucleotide ID:ENST00000525955Re-query CCDS DB by Protein ID:ENSP00000433016
Original member Current member NCBI NM_001302926.2 NP_001289855.1 Accepted alive Link to Nucleotide Sequence:NM_001302926.2Link to Protein Sequence:NP_001289855.1Re-query CCDS DB by Nucleotide ID:NM_001302926Re-query CCDS DB by Protein ID:NP_001289855Link to BLAST:NP_001289855.1
Original member Current member NCBI NM_001302927.2 NP_001289856.1 Accepted alive Link to Nucleotide Sequence:NM_001302927.2Link to Protein Sequence:NP_001289856.1Re-query CCDS DB by Nucleotide ID:NM_001302927Re-query CCDS DB by Protein ID:NP_001289856Link to BLAST:NP_001289856.1
Original member Current member NCBI NM_002728.6 NP_002719.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002728.6Link to Protein Sequence:NP_002719.3Re-query CCDS DB by Nucleotide ID:NM_002728Re-query CCDS DB by Protein ID:NP_002719Link to BLAST:NP_002719.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289855.1 222 P13727-1 222 100% 0 0
NP_001289856.1 222 P13727-1 222 100% 0 0
NP_002719.3 222 P13727-1 222 100% 0 0

Chromosomal Locations for CCDS 7955.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 57387475 57387533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57387754 57387865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57388577 57388708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57389010 57389317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57389887 57389944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGAAACTCCCCTTACTTCTGGCTCTTCTATTTGGGGCAGTTTCTGCTCTTCATCTAAGGTCTGAGACTT
CCACCTTTGAGACCCCTTTGGGTGCTAAGACGCTGCCTGAGGATGAGGAGACACCAGAGCAGGAGATGGA
GGAGACCCCTTGCAGGGAGCTGGAGGAAGAGGAGGAGTGGGGCTCTGGAAGTGAAGATGCCTCCAAGAAA
GATGGGGCTGTTGAGTCTATCTCAGTGCCAGATATGGTGGACAAAAACCTTACGTGTCCTGAGGAAGAGG
ACACAGTAAAAGTGGTGGGCATCCCTGGGTGCCAGACCTGCCGCTACCTCCTGGTGAGAAGTCTTCAGAC
GTTTAGTCAAGCTTGGTTTACTTGCCGGAGGTGCTACAGGGGCAACCTGGTTTCCATCCACAACTTCAAT
ATTAATTATCGAATCCAGTGTTCTGTCAGCGCGCTCAACCAGGGTCAAGTCTGGATTGGAGGCAGGATCA
CAGGCTCGGGTCGCTGCAGACGCTTTCAGTGGGTTGACGGCAGCCGCTGGAACTTTGCATACTGGGCTGC
TCACCAGCCCTGGTCCCGCGGTGGTCACTGCGTGGCCCTGTGTACCCGAGGAGGCCACTGGCGTCGAGCC
CACTGCCTCAGAAGACTTCCTTTCATCTGTTCCTACTGA

Translation (222 aa):
MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEWGSGSEDASKK
DGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQAWFTCRRCYRGNLVSIHNFN
INYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRWNFAYWAAHQPWSRGGHCVALCTRGGHWRRA
HCLRRLPFICSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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