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Report for CCDS7956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7956.1 Public Homo sapiens 11 SLC43A3 24 110 108 CCDS HistoryNCBI Gene:29015Re-query CCDS DB by CCDS ID:7956.1Re-query CCDS DB by GeneID:29015See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7956.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352187.5 ENSP00000337561.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000352187.5Link to Ensembl Protein Viewer:ENSP00000337561.1Re-query CCDS DB by Nucleotide ID:ENST00000352187Re-query CCDS DB by Protein ID:ENSP00000337561
Original member Current member EBI ENST00000395123.6 ENSP00000378555.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395123.6Link to Ensembl Protein Viewer:ENSP00000378555.2Re-query CCDS DB by Nucleotide ID:ENST00000395123Re-query CCDS DB by Protein ID:ENSP00000378555
Original member Current member EBI ENST00000395124.6 ENSP00000378556.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395124.6Link to Ensembl Protein Viewer:ENSP00000378556.1Re-query CCDS DB by Nucleotide ID:ENST00000395124Re-query CCDS DB by Protein ID:ENSP00000378556
Original member Current member EBI ENST00000529554.5 ENSP00000436254.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529554.5Link to Ensembl Protein Viewer:ENSP00000436254.1Re-query CCDS DB by Nucleotide ID:ENST00000529554Re-query CCDS DB by Protein ID:ENSP00000436254
Original member Current member NCBI NM_001278201.2 NP_001265130.1 Accepted alive Link to Nucleotide Sequence:NM_001278201.2Link to Protein Sequence:NP_001265130.1Re-query CCDS DB by Nucleotide ID:NM_001278201Re-query CCDS DB by Protein ID:NP_001265130Link to BLAST:NP_001265130.1
Original member Current member NCBI NM_014096.4 NP_054815.2 Accepted alive Link to Nucleotide Sequence:NM_014096.4Link to Protein Sequence:NP_054815.2Re-query CCDS DB by Nucleotide ID:NM_014096Re-query CCDS DB by Protein ID:NP_054815Link to BLAST:NP_054815.2
Original member Current member NCBI NM_017611.3 NP_060081.1 Accepted alive Link to Nucleotide Sequence:NM_017611.3Link to Protein Sequence:NP_060081.1Re-query CCDS DB by Nucleotide ID:NM_017611Re-query CCDS DB by Protein ID:NP_060081Link to BLAST:NP_060081.1
Original member Current member NCBI NM_199329.3 NP_955361.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_199329.3Link to Protein Sequence:NP_955361.1Re-query CCDS DB by Nucleotide ID:NM_199329Re-query CCDS DB by Protein ID:NP_955361Link to BLAST:NP_955361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265130.1 491 Q8NBI5-1 491 100% 0 0
NP_054815.2 491 Q8NBI5-1 491 100% 0 0
NP_060081.1 491 Q8NBI5-1 491 100% 0 0
NP_955361.1 491 Q8NBI5-1 491 100% 0 0

Chromosomal Locations for CCDS 7956.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 57407792 57407896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57409175 57409298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57409935 57410121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57414615 57414731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57414933 57415106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57416573 57416670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57417748 57417887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57420972 57421064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57421297 57421373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57423982 57424028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57425541 57425670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57425989 57426172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGCGGGCCAGGGCCTGCCCCTGCACGTGGCCACACTGCTGACTGGGCTGCTGGAATGCCTGGGCTTTG
CTGGCGTCCTCTTTGGCTGGCCTTCACTAGTGTTTGTCTTCAAGAATGAAGATTACTTTAAGGATCTGTG
TGGACCAGATGCTGGGCCGATTGGCAATGCCACAGGGCAGGCTGACTGCAAAGCCCAGGATGAGAGGTTC
TCACTCATCTTCACCCTGGGGTCCTTCATGAACAACTTCATGACATTCCCCACTGGCTACATCTTTGACC
GGTTCAAGACCACCGTGGCACGCCTCATAGCCATATTTTTCTACACCACCGCCACACTCATCATAGCCTT
CACCTCTGCAGGCTCAGCCGTGCTGCTCTTCCTGGCCATGCCAATGCTCACCATTGGGGGAATCCTGTTT
CTCATCACCAACCTGCAGATTGGGAACCTATTTGGCCAACACCGTTCGACCATCATCACTCTGTACAATG
GAGCATTTGACTCTTCCTCGGCAGTCTTCCTTATTATTAAGCTTCTTTATGAAAAAGGCATCAGCCTCAG
GGCCTCCTTCATCTTCATCTCTGTCTGCAGTACCTGGCATGTAGCACGCACTTTCCTCCTGATGCCCCGG
GGGCACATCCCATACCCACTGCCCCCCAACTACAGCTATGGCCTGTGCCCTGGGAATGGCACCACAAAGG
AAGAGAAGGAAACAGCTGAGCATGAAAACAGGGAGCTACAGTCAAAGGAGTTCCTTTCAGCGAAGGAAGA
GACCCCAGGGGCAGGGCAGAAGCAGGAACTCCGCTCCTTCTGGAGCTACGCTTTCTCTCGGCGCTTTGCC
TGGCACCTGGTGTGGCTGTCTGTGATACAGTTGTGGCACTACCTCTTCATTGGCACTCTCAACTCCTTGC
TGACCAACATGGCCGGTGGGGACATGGCACGAGTCAGCACCTACACAAATGCCTTTGCCTTCACTCAGTT
CGGAGTGCTGTGTGCCCCCTGGAATGGCCTGCTCATGGACCGGCTTAAACAGAAGTACCAGAAGGAAGCA
AGAAAGACAGGTTCCTCCACTTTGGCGGTGGCCCTCTGCTCGACGGTGCCTTCGCTGGCCCTGACATCCC
TGCTGTGCCTGGGCTTCGCCCTCTGTGCCTCAGTCCCCATCCTCCCTCTCCAGTACCTCACCTTCATCCT
GCAAGTGATCAGCCGCTCCTTCCTCTATGGGAGCAACGCGGCCTTCCTCACCCTTGCTTTCCCTTCAGAG
CACTTTGGCAAGCTCTTTGGGCTGGTGATGGCCTTGTCGGCTGTGGTGTCTCTGCTCCAGTTCCCCATCT
TCACCCTCATCAAAGGCTCCCTTCAGAATGACCCATTTTACGTGAATGTGATGTTCATGCTTGCCATTCT
TCTGACATTCTTCCACCCCTTTCTGGTATATCGGGAATGCCGTACTTGGAAAGAAAGTCCCTCTGCAATT
GCATAG

Translation (491 aa):
MAGQGLPLHVATLLTGLLECLGFAGVLFGWPSLVFVFKNEDYFKDLCGPDAGPIGNATGQADCKAQDERF
SLIFTLGSFMNNFMTFPTGYIFDRFKTTVARLIAIFFYTTATLIIAFTSAGSAVLLFLAMPMLTIGGILF
LITNLQIGNLFGQHRSTIITLYNGAFDSSSAVFLIIKLLYEKGISLRASFIFISVCSTWHVARTFLLMPR
GHIPYPLPPNYSYGLCPGNGTTKEEKETAEHENRELQSKEFLSAKEETPGAGQKQELRSFWSYAFSRRFA
WHLVWLSVIQLWHYLFIGTLNSLLTNMAGGDMARVSTYTNAFAFTQFGVLCAPWNGLLMDRLKQKYQKEA
RKTGSSTLAVALCSTVPSLALTSLLCLGFALCASVPILPLQYLTFILQVISRSFLYGSNAAFLTLAFPSE
HFGKLFGLVMALSAVVSLLQFPIFTLIKGSLQNDPFYVNVMFMLAILLTFFHPFLVYRECRTWKESPSAI
A


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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