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Report for CCDS8009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8009.1 Public Homo sapiens 11 TMEM258 24 110 108 CCDS HistoryNCBI Gene:746Re-query CCDS DB by CCDS ID:8009.1Re-query CCDS DB by GeneID:746See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8009.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257262.12 ENSP00000257262.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000257262.12Link to Ensembl Protein Viewer:ENSP00000257262.8Re-query CCDS DB by Nucleotide ID:ENST00000257262Re-query CCDS DB by Protein ID:ENSP00000257262
Original member Current member EBI ENST00000537328.6 ENSP00000443216.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000537328.6Link to Ensembl Protein Viewer:ENSP00000443216.1Re-query CCDS DB by Nucleotide ID:ENST00000537328Re-query CCDS DB by Protein ID:ENSP00000443216
Original member Current member NCBI NM_014206.4 NP_055021.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014206.4Link to Protein Sequence:NP_055021.1Re-query CCDS DB by Nucleotide ID:NM_014206Re-query CCDS DB by Protein ID:NP_055021Link to BLAST:NP_055021.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055021.1 79 P61165 79 100% 0 0

Chromosomal Locations for CCDS 8009.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61789795 61789921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61790493 61790602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61792556 61792558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (240 nt):
ATGGAGCTCGAGGCCATGAGCAGATATACCAGCCCAGTGAACCCAGCTGTCTTCCCCCATCTGACCGTGG
TGCTTTTGGCCATTGGCATGTTCTTCACCGCCTGGTTCTTCGTTTACGAGGTCACCTCTACCAAGTACAC
TCGTGATATCTATAAAGAGCTCCTCATCTCCTTAGTGGCCTCACTCTTCATGGGCTTTGGAGTCCTCTTC
CTGCTGCTCTGGGTTGGCATCTACGTGTGA

Translation (79 aa):
MELEAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLFMGFGVLF
LLLWVGIYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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