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Report for CCDS80249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80249.1 Public Mus musculus 5 Mpv17 23 108 98 CCDS HistoryNCBI Gene:17527Re-query CCDS DB by CCDS ID:80249.1Re-query CCDS DB by GeneID:17527See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000202241.3 ENSMUSP00000144119.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202241.3Link to Ensembl Protein Viewer:ENSMUSP00000144119.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202241Re-query CCDS DB by Protein ID:ENSMUSP00000144119
Original member Current member NCBI NM_001310528.1 NP_001297457.1 Accepted alive Link to Nucleotide Sequence:NM_001310528.1Link to Protein Sequence:NP_001297457.1Re-query CCDS DB by Nucleotide ID:NM_001310528Re-query CCDS DB by Protein ID:NP_001297457Link to BLAST:NP_001297457.1

Chromosomal Locations for CCDS 80249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31141781 31141850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31144700 31144752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31145240 31145278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31145495 31145590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31145684 31145776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31145973 31146088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31153668 31153737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGGCACTCTGGCGAGCATACCAGAGAGCCCTGGCAGCACATCCGTGGAAAGTCCAGGTTCTGACAGCTG
GATCACTGATGGGCGTAGGTGACATGATCTCACAGCAGCTGGTGGAGAGGCGGGGTCTCCAGCAACACCA
GGCAGGCCGCACTCTGACCATGGTATCCCTGGGCTGTGGCTTTGTGGGCCCTGTCGTCGGAGGCTGGTAC
AAAGTTTTAGACCACTTAATCCCGGGCACCACGAAGGTGCATGCACTGAAGAAGATGTTGTTAGATCAGG
GGGGCTTTGCCCCATGTTTCCTAGGCTGCTTTCTCCCACTGGTCGGGATACTCAATGGAATGTCAGCCCA
GGACAATTGGGCCAAACTGAAGCGGGACTACCCTGATGCCCTCATCACCAACTACTATGTAAGACTCTGG
CCTGCTGTGCAGTTAGCCAACTTCTACCTGGTCCCCCTGCATTACAGGTTGGCTGTTGTCCAGTGTGTTG
CTATTGTCTGGAACTCCTACCTATCCTGGAAGGCACATCAGTTCTAA

Translation (178 aa):
MALWRAYQRALAAHPWKVQVLTAGSLMGVGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVGPVVGGWY
KVLDHLIPGTTKVHALKKMLLDQGGFAPCFLGCFLPLVGILNGMSAQDNWAKLKRDYPDALITNYYVRLW
PAVQLANFYLVPLHYRLAVVQCVAIVWNSYLSWKAHQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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