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Report for CCDS80280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80280.1 Public Mus musculus 5 Dhx15 23 108 98 CCDS HistoryNCBI Gene:13204Re-query CCDS DB by CCDS ID:80280.1Re-query CCDS DB by GeneID:13204See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80280.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000199321.4 ENSMUSP00000143069.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199321.4Link to Ensembl Protein Viewer:ENSMUSP00000143069.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199321Re-query CCDS DB by Protein ID:ENSMUSP00000143069
Original member Current member NCBI NM_001042620.2 NP_001036085.1 Accepted alive Link to Nucleotide Sequence:NM_001042620.2Link to Protein Sequence:NP_001036085.1Re-query CCDS DB by Nucleotide ID:NM_001042620Re-query CCDS DB by Protein ID:NP_001036085Link to BLAST:NP_001036085.1

Chromosomal Locations for CCDS 80280.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 52154025 52154227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52157455 52157577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52160230 52160421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52160893 52161001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52161587 52161736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52162529 52162615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52166701 52166868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52169921 52170139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52171424 52171583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52180982 52181175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52184468 52184903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 52190280 52190350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGTCCAAGAGGCATCGGTTGGACCTGGGGGAGGATTACCCCTCCGGCAAGAAGCGTGCGGGGACCGATG
GGAAAGACCGGGAACGAGATCGGGATAGAGAGGACCGATCTAAAGATCGTGACCGAGAACGTGATAGAGG
AGACAGAGAACGGGAGAGGGAAAAAGAAAAGGAAAAAGAATTGAGAGCTTCCACCAATGCTATGCTTATC
AGTGCTGGATTGCCACCTTTAAAAGCTTCTCATTCAGCTCACTCAACCCACTCGGCTCATTCAACACATT
CTACACATTCTGCCCACTCAACACACACTGGACACACAGGACACACATCACTTCCACAGTGCATTAATCC
ATTCACCAACCTGCCCCATACTCCTCGATACTATGATATTCTAAAGAAACGACTTCAGCTCCCTGTATGG
GAATACAAGGATAGATTTACAGATATTCTTGTTAGACATCAGTCATTTGTACTTGTTGGTGAGACTGGGT
CTGGTAAAACAACACAGATACCACAGTGGTGTGTGGAGTATATGCGATCCTTGCCAGGACCCAAAAGAGG
AGTCGCCTGTACACAGCCCAGGAGAGTGGCTGCAATGAGTGTGGCTCAGAGAGTTGCTGATGAGATGGAC
GTGATGTTAGGCCAGGAAGTTGGATACTCCATTCGATTTGAAGACTGCAGTAGTGCAAAAACCATTCTTA
AGTATATGACTGACGGGATGCTACTTCGTGAAGCCATGAACGATCCCCTTCTGGAGCGTTATGGTGTGAT
AATTCTTGATGAGGCCCATGAAAGAACATTGGCTACAGATATTCTCATGGGTGTTCTAAAGGAAGTTGTA
AGACAGAGATCAGATTTAAAGGTTATAGTTATGAGTGCTACCCTAGATGCTGGGAAATTCCAGATTTACT
TTGATAACTGTCCTCTCTTAACTATTCCTGGCCGAACACATCCTGTTGAGATTTTTTATACTCCAGAACC
AGAGAGAGATTATCTTGAAGCAGCAATTCGGACAGTGATCCAAATACATATGTGTGAAGAGGAGGAAGGA
GACCTTCTTCTTTTCTTGACTGGTCAAGAGGAAATTGATGAGGCCTGTAAGAGAATAAAGCGTGAAGTTG
ATGATTTGGGCCCTGAAGTTGGTGATATTAAAATCATTCCATTATATTCTACACTTCCACCCCAGCAGCA
ACAACGCATTTTTGAGCCACCACCTCCAAAAAAACAGAATGGAGCAATTGGAAGAAAGGTGGTGGTGTCA
ACTAATATTGCAGAGACCTCTTTGACAATAGACGGTGTGGTGTTTGTAATTGACCCTGGATTTGCAAAAC
AAAAGGTATATAATCCTAGAATCAGAGTCGAGTCTCTTCTGGTGACTGCCATTAGTAAAGCTTCAGCTCA
GCAAAGGGCGGGTCGAGCTGGACGGACCAGACCTGGGAAATGCTTCAGGCTTTATACAGAGAAAGCTTAT
AAAACAGAAATGCAGGACAACACCTATCCTGAGATCCTGCGCTCTAACCTAGGATCGGTTGTGTTGCAGC
TGAAGAAGCTTGGTATTGATGACTTGGTACACTTTGATTTTATGGACCCACCAGCTCCTGAAACTCTGAT
GAGAGCCCTAGAACTTTTGAATTATTTGGCTGCTTTAAATGATGATGGAGATCTGACTGAATTGGGATCC
ATGATGGCAGAGTTCCCTTTAGATCCACAGCTCGCTAAAATGGTTATTGCAAGTTGTGACTACAACTGTT
CTAATGAGGTCCTATCTATTACTGCTATGTTGTCAGTCCCACAGTGTTTTGTTCGCCCCACGGAGGCCAA
GAAAGCTGCAGATGAGGCCAAGATGAGATTTGCCCACATAGATGGAGATCATCTGACACTGCTGAATGTC
TACCACGCTTTTAAACAAAATCATGAATCTGTTCAGTGGTGTTATGACAACTTCATTAACTACCGGTCCC
TGATGTCTGCAGACAATGTACGCCAGCAGCTATCAAGAATTATGGACAGATTTAATTTGCCTCGTCGAAG
TACTGATTTCACAAGCAGGGACTATTATATTAATATAAGAAAAGCTTTGGTTACTGGGTATTTTATGCAA
GTAAGTAGTTAA

Translation (703 aa):
MSKRHRLDLGEDYPSGKKRAGTDGKDRERDRDREDRSKDRDRERDRGDREREREKEKEKELRASTNAMLI
SAGLPPLKASHSAHSTHSAHSTHSTHSAHSTHTGHTGHTSLPQCINPFTNLPHTPRYYDILKKRLQLPVW
EYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEMD
VMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVV
RQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEG
DLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVS
TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAY
KTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGS
MMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNV
YHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQ
VSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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