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Report for CCDS8042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8042.1 Public Homo sapiens 11 SLC22A8 24 110 108 CCDS HistoryNCBI Gene:9376Re-query CCDS DB by CCDS ID:8042.1Re-query CCDS DB by GeneID:9376See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8042.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336232.7 ENSP00000337335.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336232.7Link to Ensembl Protein Viewer:ENSP00000337335.2Re-query CCDS DB by Nucleotide ID:ENST00000336232Re-query CCDS DB by Protein ID:ENSP00000337335
Original member Current member EBI ENST00000430500.6 ENSP00000398548.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430500.6Link to Ensembl Protein Viewer:ENSP00000398548.2Re-query CCDS DB by Nucleotide ID:ENST00000430500Re-query CCDS DB by Protein ID:ENSP00000398548
Original member Current member NCBI NM_001184732.2 NP_001171661.1 Accepted alive Link to Nucleotide Sequence:NM_001184732.2Link to Protein Sequence:NP_001171661.1Re-query CCDS DB by Nucleotide ID:NM_001184732Re-query CCDS DB by Protein ID:NP_001171661Link to BLAST:NP_001171661.1
Original member Current member NCBI NM_004254.4 NP_004245.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004254.4Link to Protein Sequence:NP_004245.2Re-query CCDS DB by Nucleotide ID:NM_004254Re-query CCDS DB by Protein ID:NP_004245Link to BLAST:NP_004245.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171661.1 542 Q8TCC7-1 542 100% 0 0
NP_004245.2 542 Q8TCC7-1 542 100% 0 0

Chromosomal Locations for CCDS 8042.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62993237 62993336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62993424 62993627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62993770 62993878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62994542 62994756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62995704 62995819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62996029 62996152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62998921 62999089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62999688 62999842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63000720 63000823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63014626 63014958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGACCTTCTCGGAGATCCTGGACCGTGTGGGAAGCATGGGCCATTTCCAGTTCCTGCATGTAGCCATAC
TGGGCCTCCCGATCCTCAACATGGCCAACCACAACCTGCTGCAGATCTTCACAGCCGCCACCCCTGTCCA
CCACTGTCGCCCGCCCCACAATGCCTCCACAGGGCCTTGGGTGCTCCCCATGGGCCCAAATGGGAAGCCT
GAGAGGTGCCTCCGTTTTGTACATCCGCCCAATGCCAGCCTGCCCAATGACACCCAGAGGGCCATGGAGC
CATGCCTGGATGGCTGGGTCTACAACAGCACCAAGGACTCCATTGTGACAGAGTGGGACTTGGTGTGCAA
CTCCAACAAACTGAAGGAGATGGCCCAGTCTATCTTCATGGCAGGTATACTGATTGGAGGGCTCGTGCTT
GGAGACCTGTCTGACAGGTTTGGCCGCAGGCCCATCCTGACCTGCAGCTACCTGCTGCTGGCAGCCAGCG
GCTCCGGTGCAGCCTTCAGCCCCACCTTCCCCATCTACATGGTCTTCCGCTTCCTGTGTGGCTTTGGCAT
CTCAGGCATTACCCTGAGCACCGTCATCTTGAATGTGGAATGGGTGCCTACCCGGATGCGGGCCATCATG
TCGACAGCACTCGGGTACTGCTACACCTTTGGCCAGTTCATTCTGCCCGGCCTGGCCTACGCCATCCCCC
AGTGGCGTTGGCTGCAGTTAACTGTGTCCATTCCCTTCTTCGTCTTCTTCCTATCATCCTGGTGGACACC
AGAGTCCATACGCTGGTTGGTCTTGTCTGGAAAGTCCTCGAAGGCCCTGAAGATACTCCGGCGGGTGGCT
GTCTTCAATGGCAAGAAGGAAGAGGGAGAAAGGCTCAGCTTGGAGGAGCTCAAACTCAACCTGCAGAAGG
AGATCTCCTTGGCCAAGGCCAAGTACACCGCAAGTGACCTGTTCCGGATACCCATGCTGCGCCGCATGAC
CTTCTGTCTTTCCCTGGCCTGGTTTGCTACCGGTTTTGCCTACTATAGTTTGGCTATGGGTGTGGAAGAA
TTTGGAGTCAACCTCTACATCCTCCAGATCATCTTTGGTGGGGTCGATGTCCCAGCCAAGTTCATCACCA
TCCTCTCCTTAAGCTACCTGGGCCGGCATACCACTCAGGCCGCTGCCCTGCTCCTGGCAGGAGGGGCCAT
CTTGGCTCTCACCTTTGTGCCCTTGGACTTGCAGACCGTGAGGACAGTATTGGCTGTGTTTGGGAAGGGA
TGCCTATCCAGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAATTATACCCCACAGTCATCAGGCAAA
CAGGTATGGGCGTAAGTAACCTGTGGACCCGCGTGGGAAGCATGGTGTCCCCGCTGGTGAAAATCACGGG
TGAGGTACAGCCCTTCATCCCCAATATCATCTACGGGATCACCGCCCTCCTCGGGGGCAGTGCTGCCCTC
TTCCTGCCTGAGACCCTGAATCAGCCCTTGCCAGAGACTATCGAAGACCTGGAAAACTGGTCCCTGCGGG
CAAAGAAGCCAAAGCAGGAGCCAGAGGTGGAAAAGGCCTCCCAGAGGATCCCTCTACAGCCTCACGGACC
AGGCCTGGGCTCCAGCTGA

Translation (542 aa):
MTFSEILDRVGSMGHFQFLHVAILGLPILNMANHNLLQIFTAATPVHHCRPPHNASTGPWVLPMGPNGKP
ERCLRFVHPPNASLPNDTQRAMEPCLDGWVYNSTKDSIVTEWDLVCNSNKLKEMAQSIFMAGILIGGLVL
GDLSDRFGRRPILTCSYLLLAASGSGAAFSPTFPIYMVFRFLCGFGISGITLSTVILNVEWVPTRMRAIM
STALGYCYTFGQFILPGLAYAIPQWRWLQLTVSIPFFVFFLSSWWTPESIRWLVLSGKSSKALKILRRVA
VFNGKKEEGERLSLEELKLNLQKEISLAKAKYTASDLFRIPMLRRMTFCLSLAWFATGFAYYSLAMGVEE
FGVNLYILQIIFGGVDVPAKFITILSLSYLGRHTTQAAALLLAGGAILALTFVPLDLQTVRTVLAVFGKG
CLSSSFSCLFLYTSELYPTVIRQTGMGVSNLWTRVGSMVSPLVKITGEVQPFIPNIIYGITALLGGSAAL
FLPETLNQPLPETIEDLENWSLRAKKPKQEPEVEKASQRIPLQPHGPGLGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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