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Report for CCDS8083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8083.1 Public Homo sapiens 11 MEN1 24 110 108 CCDS HistoryNCBI Gene:4221Re-query CCDS DB by CCDS ID:8083.1Re-query CCDS DB by GeneID:4221See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8083.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377313.6 ENSP00000366530.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377313.6Link to Ensembl Protein Viewer:ENSP00000366530.1Re-query CCDS DB by Nucleotide ID:ENST00000377313Re-query CCDS DB by Protein ID:ENSP00000366530
Original member Current member NCBI NM_000244.4 NP_000235.3 Accepted alive Link to Nucleotide Sequence:NM_000244.4Link to Protein Sequence:NP_000235.3Re-query CCDS DB by Nucleotide ID:NM_000244Re-query CCDS DB by Protein ID:NP_000235Link to BLAST:NP_000235.3
Original member Current member NCBI NM_130800.3 NP_570712.2 Accepted alive Link to Nucleotide Sequence:NM_130800.3Link to Protein Sequence:NP_570712.2Re-query CCDS DB by Nucleotide ID:NM_130800Re-query CCDS DB by Protein ID:NP_570712Link to BLAST:NP_570712.2
Original member Current member NCBI NM_130801.3 NP_570713.2 Accepted alive Link to Nucleotide Sequence:NM_130801.3Link to Protein Sequence:NP_570713.2Re-query CCDS DB by Nucleotide ID:NM_130801Re-query CCDS DB by Protein ID:NP_570713Link to BLAST:NP_570713.2
Original member Current member NCBI NM_130802.3 NP_570714.2 Accepted alive Link to Nucleotide Sequence:NM_130802.3Link to Protein Sequence:NP_570714.2Re-query CCDS DB by Nucleotide ID:NM_130802Re-query CCDS DB by Protein ID:NP_570714Link to BLAST:NP_570714.2
Original member Current member NCBI NM_130803.3 NP_570715.2 Accepted alive Link to Nucleotide Sequence:NM_130803.3Link to Protein Sequence:NP_570715.2Re-query CCDS DB by Nucleotide ID:NM_130803Re-query CCDS DB by Protein ID:NP_570715Link to BLAST:NP_570715.2
Original member Current member NCBI NM_130804.3 NP_570716.2 Accepted alive Link to Nucleotide Sequence:NM_130804.3Link to Protein Sequence:NP_570716.2Re-query CCDS DB by Nucleotide ID:NM_130804Re-query CCDS DB by Protein ID:NP_570716Link to BLAST:NP_570716.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000235.3 615 O00255-1 615 100% 0 0
NP_570712.2 615 O00255-1 615 100% 0 0
NP_570713.2 615 O00255-1 615 100% 0 0
NP_570714.2 615 O00255-1 615 100% 0 0
NP_570715.2 615 O00255-1 615 100% 0 0
NP_570716.2 615 O00255-1 615 100% 0 0

Chromosomal Locations for CCDS 8083.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64804334 64804816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64805034 64805198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64805635 64805770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64806232 64806368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64807011 64807098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64807179 64807219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64807552 64807680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64807891 64808099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64809650 64810109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGGGGCTGAAGGCCGCCCAGAAGACGCTGTTCCCGCTGCGCTCCATCGACGACGTGGTGCGCCTGTTTG
CTGCCGAGCTGGGCCGAGAGGAGCCGGACCTGGTGCTCCTTTCCTTGGTGCTGGGCTTCGTGGAGCATTT
TCTGGCTGTCAACCGCGTCATCCCTACCAACGTTCCCGAGCTCACCTTCCAGCCCAGCCCCGCCCCCGAC
CCGCCTGGCGGCCTCACCTACTTTCCCGTGGCCGACCTGTCTATCATCGCCGCCCTCTATGCCCGCTTCA
CCGCCCAGATCCGAGGCGCCGTCGACCTGTCCCTCTATCCTCGAGAAGGGGGTGTCTCCAGCCGTGAGCT
GGTGAAGAAGGTCTCCGATGTCATATGGAACAGCCTCAGCCGCTCCTACTTCAAGGATCGGGCCCACATC
CAGTCCCTCTTCAGCTTCATCACAGGTTGGAGCCCAGTAGGCACCAAATTGGACAGCTCCGGTGTGGCCT
TTGCTGTGGTTGGGGCCTGCCAGGCCCTGGGTCTCCGGGATGTCCACCTCGCCCTGTCTGAGGATCATGC
CTGGGTAGTGTTTGGGCCCAATGGGGAGCAGACAGCTGAGGTCACCTGGCACGGCAAGGGCAACGAGGAC
CGCAGGGGCCAGACAGTCAATGCCGGTGTGGCTGAGCGGAGCTGGCTGTACCTGAAAGGATCATACATGC
GCTGTGACCGCAAGATGGAGGTGGCGTTCATGGTGTGTGCCATCAACCCTTCCATTGACCTGCACACCGA
CTCGCTGGAGCTTCTGCAGCTGCAGCAGAAGCTGCTCTGGCTGCTCTATGACCTGGGACATCTGGAAAGG
TACCCCATGGCCTTAGGGAACCTGGCAGATCTAGAGGAGCTGGAGCCCACCCCTGGCCGGCCAGACCCAC
TCACCCTCTACCACAAGGGCATTGCCTCAGCCAAGACCTACTATCGGGATGAACACATCTACCCCTACAT
GTACCTGGCTGGCTACCACTGTCGCAACCGCAATGTGCGGGAAGCCCTGCAGGCCTGGGCGGACACGGCC
ACTGTCATCCAGGACTACAACTACTGCCGGGAAGACGAGGAGATCTACAAGGAGTTCTTTGAAGTAGCCA
ATGATGTCATCCCCAACCTGCTGAAGGAGGCAGCCAGCTTGCTGGAGGCGGGCGAGGAGCGGCCGGGGGA
GCAAAGCCAGGGCACCCAGAGCCAAGGTTCCGCCCTCCAGGACCCTGAGTGCTTCGCCCACCTGCTGCGA
TTCTACGACGGCATCTGCAAATGGGAGGAGGGCAGTCCCACGCCTGTGCTGCATGTGGGCTGGGCCACCT
TTCTTGTGCAGTCCCTAGGCCGTTTTGAGGGACAGGTGCGGCAGAAGGTGCGCATAGTGAGCCGAGAGGC
CGAGGCGGCCGAGGCCGAGGAGCCGTGGGGCGAGGAAGCCCGGGAAGGCCGGCGGCGGGGCCCACGGCGG
GAGTCCAAGCCAGAGGAGCCCCCGCCGCCCAAGAAGCCAGCACTGGACAAGGGCCTGGGCACCGGCCAGG
GTGCAGTGTCAGGACCCCCCCGGAAGCCTCCTGGGACTGTCGCTGGCACAGCCCGAGGCCCTGAAGGTGG
CAGCACGGCTCAGGTGCCAGCACCCACAGCATCACCACCGCCGGAGGGTCCAGTGCTCACTTTCCAGAGT
GAGAAGATGAAGGGCATGAAGGAGCTGCTGGTGGCCACCAAGATCAACTCGAGCGCCATCAAGCTGCAAC
TCACGGCACAGTCGCAAGTGCAGATGAAGAAGCAGAAAGTGTCCACCCCTAGTGACTACACTCTGTCTTT
CCTCAAGCGGCAGCGCAAAGGCCTCTGA

Translation (615 aa):
MGLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPELTFQPSPAPD
PPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKKVSDVIWNSLSRSYFKDRAHI
QSLFSFITGWSPVGTKLDSSGVAFAVVGACQALGLRDVHLALSEDHAWVVFGPNGEQTAEVTWHGKGNED
RRGQTVNAGVAERSWLYLKGSYMRCDRKMEVAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLER
YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA
TVIQDYNYCREDEEIYKEFFEVANDVIPNLLKEAASLLEAGEERPGEQSQGTQSQGSALQDPECFAHLLR
FYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVSREAEAAEAEEPWGEEAREGRRRGPRR
ESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKPPGTVAGTARGPEGGSTAQVPAPTASPPPEGPVLTFQS
EKMKGMKELLVATKINSSAIKLQLTAQSQVQMKKQKVSTPSDYTLSFLKRQRKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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